ggKbase home page

RTP_07252018_0_1um_Hydrogenophilales_62_9

RTP_07252018_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_9
In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 614 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_7278
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 5149 bp 63.93 17.10 92.52
RTP_07252018_0_1um_scaffold_11124
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4206 bp 62.77 17.23 92.51
RTP_07252018_0_1um_scaffold_68577
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1090 bp 58.62 7.57 92.48
RTP_07252018_0_1um_scaffold_21054
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2537 bp 62.00 8.81 92.47
RTP_07252018_0_1um_scaffold_11784
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3719 bp 63.83 9.96 92.44
RTP_07252018_0_1um_scaffold_16979
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2934 bp 61.04 17.54 92.43
RTP_07252018_0_1um_scaffold_61352
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1188 bp 67.00 6.44 92.42
RTP_07252018_0_1um_scaffold_28378
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2078 bp 58.47 5.05 92.40
RTP_07252018_0_1um_scaffold_2335
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (64.29%)
14 11496 bp 61.05 9.45 92.38
RTP_07252018_0_1um_scaffold_9816
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (88.89%)
9 6864 bp 60.23 10.53 92.29
RTP_07252018_0_1um_scaffold_27253
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3904 bp 60.81 11.22 92.29
RTP_07252018_0_1um_scaffold_3056
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
10 9435 bp 62.63 15.06 92.27
RTP_07252018_0_1um_scaffold_8895
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 4490 bp 63.96 7.22 92.27
RTP_07252018_0_1um_scaffold_7339
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 5112 bp 64.61 9.83 92.25
RTP_07252018_0_1um_scaffold_1377
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (84.62%)
26 17513 bp 61.43 14.73 92.25
RTP_07252018_0_1um_scaffold_5823
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (90%)
10 5986 bp 63.26 9.85 92.22
RTP_07252018_0_1um_scaffold_12554
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 3573 bp 65.35 7.43 92.19
RTP_07252018_0_1um_scaffold_2507
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (61.54%)
13 10931 bp 60.96 14.75 92.16
RTP_07252018_0_1um_scaffold_3173
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
15 13135 bp 63.37 12.04 92.04
RTP_07252018_0_1um_scaffold_55025
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1291 bp 59.95 5.46 92.02
RTP_07252018_0_1um_scaffold_4763
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (91.67%)
12 9179 bp 61.32 10.28 92.00
RTP_07252018_0_1um_scaffold_3650
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (88.89%)
9 8271 bp 63.23 8.43 91.91
RTP_07252018_0_1um_scaffold_3719
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (55.56%)
9 8776 bp 60.30 9.88 91.82
RTP_07252018_0_1um_scaffold_36750
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1735 bp 60.75 5.45 91.82
RTP_07252018_0_1um_scaffold_12745
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3543 bp 65.06 10.25 91.79
RTP_07252018_0_1um_scaffold_7648
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (71.43%)
7 5570 bp 60.02 9.56 91.76
RTP_07252018_0_1um_scaffold_15418
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3129 bp 59.16 8.25 91.75
RTP_07252018_0_1um_scaffold_15392
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 3132 bp 62.20 9.82 91.67
RTP_07252018_0_1um_scaffold_4437
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
10 7197 bp 63.96 7.86 91.66
RTP_07252018_0_1um_scaffold_64789
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1139 bp 62.60 10.27 91.66
RTP_07252018_0_1um_scaffold_9789
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 4201 bp 63.20 7.93 91.62
RTP_07252018_0_1um_scaffold_15932
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 3059 bp 63.09 5.98 91.60
RTP_07252018_0_1um_scaffold_3236
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (62.5%)
8 9018 bp 62.08 9.81 91.55
RTP_07252018_0_1um_scaffold_47237
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1449 bp 67.15 5.49 91.51
RTP_07252018_0_1um_scaffold_14031
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3327 bp 66.37 6.90 91.43
RTP_07252018_0_1um_scaffold_3608
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (55.56%)
9 8335 bp 63.29 9.20 91.42
RTP_07252018_0_1um_scaffold_11605
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 3759 bp 64.49 7.90 91.38
RTP_07252018_0_1um_scaffold_58931
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1225 bp 66.37 8.20 91.35
RTP_07252018_0_1um_scaffold_70849
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1061 bp 60.51 5.23 91.33
RTP_07252018_0_1um_scaffold_19969
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3792 bp 63.00 7.20 91.22
RTP_07252018_0_1um_scaffold_5987
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (70%)
10 6489 bp 61.98 9.18 91.17
RTP_07252018_0_1um_scaffold_10421
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (57.14%)
7 4032 bp 66.05 5.39 91.15
RTP_07252018_0_1um_scaffold_8140
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (57.14%)
7 4771 bp 62.33 12.10 91.11
RTP_07252018_0_1um_scaffold_7005
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (70%)
10 7929 bp 65.38 8.19 91.11
RTP_07252018_0_1um_scaffold_19057
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 2711 bp 58.65 8.96 91.07
RTP_07252018_0_1um_scaffold_61517
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1186 bp 65.68 7.34 91.06
RTP_07252018_0_1um_scaffold_12492
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3582 bp 61.00 7.58 91.04
RTP_07252018_0_1um_scaffold_2780
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (61.9%)
21 21362 bp 60.55 8.83 90.90
RTP_07252018_0_1um_scaffold_2249
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (69.23%)
13 11786 bp 61.46 11.95 90.79
RTP_07252018_0_1um_scaffold_1693
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (94.74%)
19 14877 bp 62.74 8.99 90.72
Displaying items 351-400 of 614 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.