ggKbase home page

RTP_07252018_0_1um_Hydrogenophilales_62_9

RTP_07252018_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_9
In projects: RTP_07252018_0_1um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 301-350 of 614 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_07252018_0_1um_scaffold_58160
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1238 bp 60.26 5.09 93.78
RTP_07252018_0_1um_scaffold_46730
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1459 bp 65.25 5.96 93.76
RTP_07252018_0_1um_scaffold_699
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (63.33%)
30 30799 bp 63.09 8.65 93.73
RTP_07252018_0_1um_scaffold_17031
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 2926 bp 56.32 4.36 93.71
RTP_07252018_0_1um_scaffold_2470
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (71.43%)
14 11048 bp 65.11 9.57 93.68
RTP_07252018_0_1um_scaffold_40726
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1613 bp 63.42 7.53 93.55
RTP_07252018_0_1um_scaffold_3369
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
7 8768 bp 64.40 16.92 93.54
RTP_07252018_0_1um_scaffold_11233
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3835 bp 58.25 6.30 93.48
RTP_07252018_0_1um_scaffold_2737
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
8 10276 bp 58.33 9.62 93.48
RTP_07252018_0_1um_scaffold_7849
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4883 bp 62.73 5.93 93.45
RTP_07252018_0_1um_scaffold_3567
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (72.73%)
11 8400 bp 62.80 8.27 93.43
RTP_07252018_0_1um_scaffold_5368
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (57.14%)
7 7078 bp 65.75 5.93 93.42
RTP_07252018_0_1um_scaffold_718
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (69.23%)
39 35584 bp 59.61 8.64 93.41
RTP_07252018_0_1um_scaffold_2518
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (62.5%)
8 10893 bp 59.48 10.37 93.39
RTP_07252018_0_1um_scaffold_11419
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 3796 bp 61.96 11.85 93.34
RTP_07252018_0_1um_scaffold_1763
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (69.23%)
13 14172 bp 62.60 8.94 93.31
RTP_07252018_0_1um_scaffold_12792
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3534 bp 58.74 8.49 93.29
RTP_07252018_0_1um_scaffold_21662
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2490 bp 60.80 11.27 93.25
RTP_07252018_0_1um_scaffold_49895
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1390 bp 58.42 6.69 93.24
RTP_07252018_0_1um_scaffold_29561
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 2018 bp 61.65 7.66 93.21
RTP_07252018_0_1um_scaffold_67348
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2430 bp 65.43 6.17 93.21
RTP_07252018_0_1um_scaffold_58440
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1233 bp 69.10 4.74 93.19
RTP_07252018_0_1um_scaffold_29444
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 2025 bp 62.32 4.59 93.19
RTP_07252018_0_1um_scaffold_11079
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
8 3870 bp 61.34 7.52 93.18
RTP_07252018_0_1um_scaffold_1158
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (72.41%)
29 23767 bp 63.13 11.17 93.17
RTP_07252018_0_1um_scaffold_12165
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 3642 bp 63.26 7.87 93.16
RTP_07252018_0_1um_scaffold_7242
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 5165 bp 65.65 7.41 93.11
RTP_07252018_0_1um_scaffold_9988
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 4147 bp 65.73 13.82 93.10
RTP_07252018_0_1um_scaffold_17660
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2859 bp 60.65 5.67 93.07
RTP_07252018_0_1um_scaffold_1810
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (77.78%)
18 15464 bp 61.92 9.93 93.04
RTP_07252018_0_1um_scaffold_3948
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (77.78%)
9 7861 bp 62.59 9.60 93.04
RTP_07252018_0_1um_scaffold_54325
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1303 bp 61.78 6.91 93.02
RTP_07252018_0_1um_scaffold_6140
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (57.14%)
7 5768 bp 63.31 8.01 93.00
RTP_07252018_0_1um_scaffold_526
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (82.93%)
41 39761 bp 60.70 9.19 93.00
RTP_07252018_0_1um_scaffold_1681
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (77.78%)
9 14935 bp 63.02 9.66 92.98
RTP_07252018_0_1um_scaffold_1440
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (85.71%)
21 16865 bp 61.46 9.81 92.96
RTP_07252018_0_1um_scaffold_1577
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (61.11%)
18 15717 bp 62.05 15.28 92.96
RTP_07252018_0_1um_scaffold_1258
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
20 18882 bp 61.88 8.06 92.87
RTP_07252018_0_1um_scaffold_34115
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 1826 bp 64.68 7.31 92.83
RTP_07252018_0_1um_scaffold_3607
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
10 10198 bp 61.81 10.15 92.81
RTP_07252018_0_1um_scaffold_5135
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 6520 bp 65.12 7.41 92.81
RTP_07252018_0_1um_scaffold_1715
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (73.33%)
15 14617 bp 65.18 11.38 92.79
RTP_07252018_0_1um_scaffold_60203
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1206 bp 64.84 5.47 92.79
RTP_07252018_0_1um_scaffold_5609
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 6141 bp 63.67 9.01 92.77
RTP_07252018_0_1um_scaffold_9188
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 4391 bp 58.80 8.78 92.71
RTP_07252018_0_1um_scaffold_27425
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2126 bp 61.95 5.08 92.71
RTP_07252018_0_1um_scaffold_44812
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1505 bp 62.33 5.18 92.69
RTP_07252018_0_1um_scaffold_5437
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 6266 bp 60.64 15.49 92.60
RTP_07252018_0_1um_scaffold_54526
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1847 bp 62.75 6.82 92.58
RTP_07252018_0_1um_scaffold_3265
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (92.31%)
13 8964 bp 62.62 10.58 92.54
Displaying items 301-350 of 614 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.