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RTP_09252017_14_Hydrogenophilales_65_8

In projects: RTP_09252017_14  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 351-400 of 710 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_09252017_14_scaffold_3324
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 5806 bp 64.16 7.29 93.37
RTP_09252017_14_scaffold_2254
Order: Hydrogenophilales (66.67%)
9 7646 bp 65.85 8.79 93.38
RTP_09252017_14_scaffold_5819
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 4171 bp 67.11 6.80 93.43
RTP_09252017_14_scaffold_30727
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1746 bp 65.01 3.95 93.47
RTP_09252017_14_scaffold_1258
Species: GWE1_Thiobacillus_62_9_curated (60%)
15 12949 bp 64.35 9.67 93.53
RTP_09252017_14_scaffold_1623
Species: GWE1_Thiobacillus_62_9_curated (50%)
12 10190 bp 64.46 9.67 93.53
RTP_09252017_14_scaffold_1094
Species: GWE1_Thiobacillus_62_9_curated (57.89%)
19 15110 bp 63.94 10.15 93.53
RTP_09252017_14_scaffold_456
Species: GWE1_Thiobacillus_62_9_curated (57.14%)
49 43844 bp 64.56 9.64 93.56
RTP_09252017_14_scaffold_8278
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 3479 bp 58.32 3.66 93.56
RTP_09252017_14_scaffold_3356
Order: Hydrogenophilales (75%)
8 5769 bp 68.00 8.58 93.60
RTP_09252017_14_scaffold_1673
Species: GWE1_Thiobacillus_62_9_curated (72.73%)
11 9887 bp 66.16 9.01 93.61
RTP_09252017_14_scaffold_7383
Species: GWE1_Thiobacillus_62_9_curated (57.14%)
7 3691 bp 64.32 9.06 93.63
RTP_09252017_14_scaffold_611
Order: Hydrogenophilales (87.1%)
31 32039 bp 64.84 9.56 93.64
RTP_09252017_14_scaffold_2951
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 6225 bp 64.96 8.55 93.64
RTP_09252017_14_scaffold_1234
Species: GWE1_Thiobacillus_62_9_curated (60%)
10 13281 bp 64.35 10.55 93.65
RTP_09252017_14_scaffold_1740
Species: GWE1_Thiobacillus_62_9_curated (54.55%)
11 9464 bp 63.69 7.73 93.70
RTP_09252017_14_scaffold_3302
Species: GWE1_Thiobacillus_62_9_curated (80%)
5 6499 bp 66.29 8.86 93.71
RTP_09252017_14_scaffold_956
Species: GWE1_Thiobacillus_62_9_curated (62.5%)
24 23654 bp 65.97 9.16 93.71
RTP_09252017_14_scaffold_4327
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 4965 bp 63.16 8.73 93.72
RTP_09252017_14_scaffold_13977
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2666 bp 67.44 9.56 93.74
RTP_09252017_14_scaffold_12925
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 2777 bp 65.39 6.37 93.77
RTP_09252017_14_scaffold_5846
Species: GWE1_Thiobacillus_62_9_curated (100%)
4 4159 bp 64.49 9.63 93.77
RTP_09252017_14_scaffold_7441
Species: GWE1_Thiobacillus_62_9_curated (80%)
5 3675 bp 62.56 8.04 93.80
RTP_09252017_14_scaffold_65615
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1113 bp 66.49 3.50 93.80
RTP_09252017_14_scaffold_3380
Species: GWE1_Thiobacillus_62_9_curated (80%)
10 9067 bp 65.27 9.68 93.80
RTP_09252017_14_scaffold_63911
Order: Hydrogenophilales (100%)
3 1132 bp 62.01 3.18 93.82
RTP_09252017_14_scaffold_60852
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1167 bp 60.67 9.51 93.83
RTP_09252017_14_scaffold_29297
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1793 bp 68.38 7.28 93.87
RTP_09252017_14_scaffold_42611
Order: Hydrogenophilales (100%)
3 1451 bp 64.30 4.55 93.87
RTP_09252017_14_scaffold_59592
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1182 bp 62.18 3.30 93.91
RTP_09252017_14_scaffold_72807
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1041 bp 61.58 6.77 93.95
RTP_09252017_14_scaffold_4655
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
6 4735 bp 65.32 8.36 94.02
RTP_09252017_14_scaffold_888
Species: GWE1_Thiobacillus_62_9_curated (84.21%)
19 19817 bp 65.97 8.31 94.03
RTP_09252017_14_scaffold_2134
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 8023 bp 63.62 8.81 94.04
RTP_09252017_14_scaffold_1592
Order: Hydrogenophilales (76.92%)
13 10404 bp 66.07 8.54 94.09
RTP_09252017_14_scaffold_76587
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1007 bp 66.93 3.28 94.14
RTP_09252017_14_scaffold_9662
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 3215 bp 70.23 6.02 94.15
RTP_09252017_14_scaffold_2604
Species: GWE1_Thiobacillus_62_9_curated (70%)
10 7560 bp 59.35 7.30 94.17
RTP_09252017_14_scaffold_1167
Species: GWE1_Thiobacillus_62_9_curated (55.56%)
18 14028 bp 65.03 9.76 94.18
RTP_09252017_14_scaffold_8692
Species: GWE1_Thiobacillus_62_9_curated (100%)
4 6045 bp 64.47 7.69 94.19
RTP_09252017_14_scaffold_62382
Species: GWE1_Thiobacillus_62_9_curated (75%)
4 1149 bp 69.54 3.26 94.26
RTP_09252017_14_scaffold_13287
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2737 bp 65.91 7.67 94.26
RTP_09252017_14_scaffold_1506
Species: GWE1_Thiobacillus_62_9_curated (70%)
20 13232 bp 63.94 9.05 94.29
RTP_09252017_14_scaffold_48871
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1336 bp 62.20 8.76 94.31
RTP_09252017_14_scaffold_952
Order: Hydrogenophilales (100%)
20 18296 bp 64.71 7.34 94.32
RTP_09252017_14_scaffold_24935
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1962 bp 68.55 6.73 94.34
RTP_09252017_14_scaffold_2354
Species: GWE1_Thiobacillus_62_9_curated (80%)
10 7361 bp 67.10 9.07 94.35
RTP_09252017_14_scaffold_1642
Species: GWE1_Thiobacillus_62_9_curated (85.71%)
7 10066 bp 66.16 9.75 94.36
RTP_09252017_14_scaffold_1301
Order: Hydrogenophilales (70.59%)
17 12576 bp 65.73 9.17 94.39
RTP_09252017_14_scaffold_1228
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
15 21613 bp 65.77 8.65 94.40
Displaying items 351-400 of 710 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.