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RTP_09252017_14_Hydrogenophilales_65_8

In projects: RTP_09252017_14  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 401-450 of 710 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_09252017_14_scaffold_789
Order: Hydrogenophilales (100%)
22 22631 bp 65.66 8.40 94.41
RTP_09252017_14_scaffold_22146
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2094 bp 62.61 7.02 94.41
RTP_09252017_14_scaffold_968
Order: Hydrogenophilales (82.35%)
17 19319 bp 64.28 8.36 94.46
RTP_09252017_14_scaffold_2206
Order: Hydrogenophilales (66.67%)
9 7818 bp 66.71 8.02 94.47
RTP_09252017_14_scaffold_5715
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 4212 bp 65.69 9.72 94.52
RTP_09252017_14_scaffold_53755
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1260 bp 66.19 3.93 94.52
RTP_09252017_14_scaffold_5045
Species: GWE1_Thiobacillus_62_9_curated (100%)
7 4522 bp 60.53 8.96 94.54
RTP_09252017_14_scaffold_3593
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (80%)
5 5540 bp 67.27 8.72 94.55
RTP_09252017_14_scaffold_59959
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1177 bp 67.37 7.26 94.56
RTP_09252017_14_scaffold_12915
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
6 2778 bp 65.12 8.53 94.56
RTP_09252017_14_scaffold_58481
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1196 bp 69.90 5.52 94.57
RTP_09252017_14_scaffold_38203
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1544 bp 66.26 3.59 94.62
RTP_09252017_14_scaffold_1117
Order: Hydrogenophilales (78.95%)
19 20261 bp 65.95 9.42 94.68
RTP_09252017_14_scaffold_15301
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 2544 bp 65.61 4.83 94.69
RTP_09252017_14_scaffold_2726
Species: GWE1_Thiobacillus_62_9_curated (73.33%)
15 6597 bp 59.39 9.53 94.77
RTP_09252017_14_scaffold_1960
Species: GWE1_Thiobacillus_62_9_curated (63.64%)
11 8585 bp 64.47 9.00 94.80
RTP_09252017_14_scaffold_55401
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1237 bp 62.25 5.09 94.83
RTP_09252017_14_scaffold_59519
Order: Hydrogenophilales (66.67%)
3 1183 bp 65.93 3.04 94.84
RTP_09252017_14_scaffold_961
Species: GWE1_Thiobacillus_62_9_curated (52.38%)
21 18117 bp 66.46 9.18 94.90
RTP_09252017_14_scaffold_1733
Species: GWE1_Thiobacillus_62_9_curated (87.5%)
8 11629 bp 65.72 8.99 94.94
RTP_09252017_14_scaffold_2309
Species: GWE1_Thiobacillus_62_9_curated (62.5%)
8 7493 bp 66.80 7.79 94.97
RTP_09252017_14_scaffold_6232
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
6 4024 bp 65.53 8.05 94.98
RTP_09252017_14_scaffold_26561
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1895 bp 63.43 3.80 94.99
RTP_09252017_14_scaffold_1398
Order: Hydrogenophilales (100%)
13 11635 bp 64.61 9.37 95.02
RTP_09252017_14_scaffold_14781
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2592 bp 58.56 6.13 95.02
RTP_09252017_14_scaffold_19182
Order: Hydrogenophilales (100%)
3 2260 bp 66.99 8.56 95.04
RTP_09252017_14_scaffold_1752
Species: GWE1_Thiobacillus_62_9_curated (55.56%)
18 13417 bp 66.21 9.97 95.05
RTP_09252017_14_scaffold_10740
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 3051 bp 65.81 9.34 95.08
RTP_09252017_14_scaffold_1421
Species: GWE1_Thiobacillus_62_9_curated (52.94%)
17 13388 bp 63.87 8.93 95.10
RTP_09252017_14_scaffold_32736
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1687 bp 66.75 7.47 95.14
RTP_09252017_14_scaffold_2994
Species: CG_Hydro_01 (62.5%)
8 7636 bp 64.75 6.25 95.15
RTP_09252017_14_scaffold_55300
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1239 bp 70.14 3.15 95.16
RTP_09252017_14_scaffold_19775
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 2222 bp 66.74 4.86 95.18
RTP_09252017_14_scaffold_34934
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1626 bp 67.53 4.70 95.20
RTP_09252017_14_scaffold_48454
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 2149 bp 65.61 5.23 95.21
RTP_09252017_14_scaffold_7717
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 3611 bp 66.44 10.47 95.29
RTP_09252017_14_scaffold_1996
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 8450 bp 66.44 8.82 95.33
RTP_09252017_14_scaffold_66497
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1104 bp 69.38 4.35 95.38
RTP_09252017_14_scaffold_1608
Species: GWE1_Thiobacillus_62_9_curated (70%)
10 10303 bp 66.07 9.86 95.39
RTP_09252017_14_scaffold_6253
Species: GWE1_Thiobacillus_62_9_curated (100%)
4 4019 bp 62.45 8.14 95.40
RTP_09252017_14_scaffold_1979
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 9896 bp 67.13 10.41 95.44
RTP_09252017_14_scaffold_1203
Species: GWE1_Thiobacillus_62_9_curated (61.54%)
26 27248 bp 67.37 8.82 95.47
RTP_09252017_14_scaffold_5036
Order: Hydrogenophilales (100%)
7 4530 bp 64.59 8.61 95.50
RTP_09252017_14_scaffold_4266
Species: GWE1_Thiobacillus_62_9_curated (100%)
8 5924 bp 66.37 8.79 95.51
RTP_09252017_14_scaffold_64636
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1124 bp 70.64 3.87 95.55
RTP_09252017_14_scaffold_7521
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 3654 bp 68.69 8.54 95.57
RTP_09252017_14_scaffold_36177
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1594 bp 66.75 3.76 95.61
RTP_09252017_14_scaffold_45734
Species: CG_Hydro_01 (100%)
1 1390 bp 63.53 3.02 95.61
RTP_09252017_14_scaffold_19515
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2239 bp 62.44 5.69 95.67
RTP_09252017_14_scaffold_55577
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1235 bp 66.32 3.89 95.71
Displaying items 401-450 of 710 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.