ggKbase home page

RifSed_csp1_13ft_4_scaffold_401

Search features with annotation key words

Displaying 24 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_13ft_4_scaffold_401_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

1..348
DNA (348bp) protein (116aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IME5_NITGG
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_4_scaffold_401_2

Not on your lists

comp(545..913)
DNA (369bp) protein (123aa)
HxlR family transcriptional regulator Tax=mine drainage metagenome RepID=T1BGL7_9ZZZZ
HxlR family transcriptional regulator {ECO:0000313|EMBL:EQD67768.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RifSed_csp1_13ft_4_scaffold_401_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1182..2591
DNA (1410bp) protein (470aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
merA1; mercuric reductase (EC:1.16.1.1)
Mercuric reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGG9_NITGG
RifSed_csp1_13ft_4_scaffold_401_4
unknown

Not on your lists

comp(2837..2965)
DNA (129bp) protein (43aa)

This feature has no annotations

RifSed_csp1_13ft_4_scaffold_401_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(3023..6214)
DNA (3192bp) protein (1064aa)
putative molybdopterin oxidoreductase molybdopterin binding subunit; K08357 tetrathionate reductase subunit A bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
putative molybdopterin oxidoreductase molybdopterin binding subunit
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_4_scaffold_401_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(6211..7338)
DNA (1128bp) protein (376aa)
Polysulphide reductase NrfD Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HEY5_ANADF
polysulfide reductase NrfD
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_4_scaffold_401_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(7335..8186)
DNA (852bp) protein (284aa)
Molybdenum protein medium subunit Tax=Vibrio campbellii (strain ATCC BAA-1116 / BB120) RepID=A7MYH7_VIBCB
molybdenum protein medium subunit
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_4_scaffold_401_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

8328..8903
DNA (576bp) protein (192aa)
psmB3; proteasome subunit beta (EC:3.4.25.1)
Proteasome subunit beta Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IL55_NITGG
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_4_scaffold_401_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

8903..9607
DNA (705bp) protein (235aa)
proteasome subunit alpha 1 (EC:3.4.25.1)
Proteasome, subunit alpha Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INY1_NITGG
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_13ft_4_scaffold_401_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

9692..10234
DNA (543bp) protein (181aa)
ATP:cob(I)alamin adenosyltransferase Tax=Roseiflexus sp. (strain RS-1) RepID=A5UUR4_ROSS1
ATP--cobalamin adenosyltransferase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_4_scaffold_401_11
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(10226..11299)
DNA (1074bp) protein (358aa)
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase (EC:2.4.1.227)
Glycosyltransferase 28 domain Tax=Thaumarchaeota archaeon N4 RepID=V6AQI2_9ARCH
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_4_scaffold_401_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

11405..12469
DNA (1065bp) protein (355aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00036A36A4
DNA primase large subunit
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_13ft_4_scaffold_401_13
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(12423..13043)
DNA (621bp) protein (207aa)
Phosphatidylglycerophosphate synthase Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TBW0_9EURY
Phosphatidylglycerophosphate synthase
Phosphatidylglycerophosphate synthase {ECO:0000313|EMBL:AGN27176.1}; species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" source="Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1.;"
RifSed_csp1_13ft_4_scaffold_401_14
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(13034..13564)
DNA (531bp) protein (177aa)
adenylate kinase (EC:2.7.4.3)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00037B963D
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_13ft_4_scaffold_401_15
unknown

Not on your lists

13606..14277
DNA (672bp) protein (224aa)

This feature has no annotations

RifSed_csp1_13ft_4_scaffold_401_16
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(14293..15180)
DNA (888bp) protein (296aa)
Putative CcmB protein Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBR0_9ZZZZ
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_13ft_4_scaffold_401_17
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(15177..16115)
DNA (939bp) protein (313aa)
sulfate-transporting ATPase (EC:3.6.3.25)
ABC transporter-like protein bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=bin9_gal15 organism_group=GAL15
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_13ft_4_scaffold_401_18
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(16196..17689)
DNA (1494bp) protein (498aa)
Carbohydrate binding family 6 Tax=Methanobacterium formicicum DSM 3637 RepID=K2RQ51_METFO
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_13ft_4_scaffold_401_19
R_RIF_OD1_02_44_13, RIF-OD1-2, Parcubacteria, Bacteria

Not on your lists

17813..19198
DNA (1386bp) protein (462aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_02_44_13_curated
RifSed_csp1_13ft_4_scaffold_401_20
unknown

Not on your lists

comp(19195..19962)
DNA (768bp) protein (256aa)

This feature has no annotations

RifSed_csp1_13ft_4_scaffold_401_21
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(20091..22784)
DNA (2694bp) protein (898aa)
ABC transporter substrate-binding protein Tax=Thermofilum sp. 1910b RepID=S5ZUP1_9CREN
ABC transporter substrate-binding protein
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_13ft_4_scaffold_401_22
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(22910..23896)
DNA (987bp) protein (329aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit Tax=Thermoproteus uzoniensis (strain 768-20) RepID=F2L0I3_THEU7
oligopeptide/dipeptide ABC transporter ATPase
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_13ft_4_scaffold_401_23
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(23893..24855)
DNA (963bp) protein (321aa)
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L5S9_KORCO
dipeptide/oligopeptide/nickel ABC transporter ATPase
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_13ft_4_scaffold_401_24
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(24871..25212)
DNA (342bp) protein (114aa)
Binding-protein-dependent transport systems inner membrane component Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A6L7_ALKEH
binding-protein-dependent transport systems inner membrane component
Tax=RBG_16_Euryarchaeota_68_13_curated
Displaying 24 items

View Taxonomy