ggKbase home page

RifSed_csp1_16ft_4_scaffold_2117

Search features with annotation key words

Displaying 18 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_16ft_4_scaffold_2117_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2..1750)
DNA (1749bp) protein (583aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003643752
ski2-like helicase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_16ft_4_scaffold_2117_2
unknown

Not on your lists

comp(1813..1962)
DNA (150bp) protein (50aa)

This feature has no annotations

RifSed_csp1_16ft_4_scaffold_2117_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1983..2513)
DNA (531bp) protein (177aa)
Putative Ras family protein Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_16ft_4_scaffold_2117_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

2666..3574
DNA (909bp) protein (303aa)
dihydroorotate dehydrogenase family protein (EC:1.3.3.1)
Dihydroorotate dehydrogenase Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IGE2_ACIB4
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_16ft_4_scaffold_2117_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

3567..4343
DNA (777bp) protein (259aa)
Probable dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BCK1_METIK
oxidoreductase FAD/NAD(P)-binding domain-containing protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_16ft_4_scaffold_2117_6
unknown

Not on your lists

comp(4434..4727)
DNA (294bp) protein (98aa)

This feature has no annotations

RifSed_csp1_16ft_4_scaffold_2117_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(4815..5285)
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Thermoplasmatales archaeon I-plasma RepID=T0MN93_9EURY
hypothetical protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_16ft_4_scaffold_2117_8
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

5506..6099
DNA (594bp) protein (198aa)
Phosphoribosyltransferase Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IB78_ACIB4
phosphoribosyltransferase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_16ft_4_scaffold_2117_9
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

6157..7758
DNA (1602bp) protein (534aa)
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QP09_VULDI
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_16ft_4_scaffold_2117_10
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(7768..8640)
DNA (873bp) protein (291aa)
Uncharacterized protein Tax=Paenibacillus barengoltzii G22 RepID=R9LDH0_9BACL
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
RifSed_csp1_16ft_4_scaffold_2117_trna_1
unknown

Not on your lists

8742..8839
DNA (98bp)
transferRNA Gln
RifSed_csp1_16ft_4_scaffold_2117_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8941..9867)
DNA (927bp) protein (309aa)
lipid kinase Tax=Desulfitobacterium sp. PCE1 RepID=UPI00037CF452
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_16ft_4_scaffold_2117_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(9860..11488)
DNA (1629bp) protein (543aa)
Glycerol-3-phosphate dehydrogenase Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CJP9_MYXFH
glycerol-3-phosphate dehydrogenase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_16ft_4_scaffold_2117_13
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(11485..13140)
DNA (1656bp) protein (552aa)
alkylglycerone-phosphate synthase (EC:2.5.1.26)
Alkylglycerone-phosphate synthase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZI0_CONWI
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_16ft_4_scaffold_2117_14
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

13245..14402
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46FS0_METBF
5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_16ft_4_scaffold_2117_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(14415..15188)
DNA (774bp) protein (258aa)
Uncharacterized protein Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HMJ7_ACIS0
RDD domain containing protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_16ft_4_scaffold_2117_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(15288..15908)
DNA (621bp) protein (207aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00036F9471
RNA 2'-phosphotransferase
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_16ft_4_scaffold_2117_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(16015..16233)
DNA (219bp) protein (73aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
Displaying 18 items

View Taxonomy