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RifSed_csp1_19ft_2_scaffold_2017

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_2017_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3..590)
DNA (588bp) protein (196aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KCZ71843.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KCZ71843.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
thlA3; acetyl-CoA acetyltransferase (EC:2.3.1.9)
ThlA3 n=2 Tax=Clostridium kluyveri RepID=A5N3I7_CLOK5
RifSed_csp1_19ft_2_scaffold_2017_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(644..1384)
DNA (741bp) protein (247aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD59_9FIRM
dehydrogenase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_2017_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(1381..2547)
DNA (1167bp) protein (389aa)
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CCB6_DESTA
poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_2017_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2572..3255)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00034BA4FE
Poly(R)-hydroxyalkanoic acid synthase subunit {ECO:0000313|EMBL:KCZ71840.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
poly(R)-hydroxyalkanoic acid synthase subunit PhaE
RifSed_csp1_19ft_2_scaffold_2017_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(3285..4340)
DNA (1056bp) protein (352aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_2017_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(4381..4629)
DNA (249bp) protein (83aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_2017_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4673..5761)
DNA (1089bp) protein (363aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71839.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_2017_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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6191..7669
DNA (1479bp) protein (493aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQ98_METZD
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_2017_9
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

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7720..9849
DNA (2130bp) protein (710aa)
response regulator receiver/GGDEF/EAL domain-containing protein id=14426278 bin=bin1_lowGC species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
RifSed_csp1_19ft_2_scaffold_2017_10
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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9833..10276
DNA (444bp) protein (148aa)
response regulator receiver protein id=14426277 bin=bin1_lowGC species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
response regulator receiver protein
Tax=RBG_13_Nitrospirae_43_8_curated
RifSed_csp1_19ft_2_scaffold_2017_11
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

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10273..11703
DNA (1431bp) protein (477aa)
Signal transduction histidine kinase n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TAP4_METSL rbh
signal transduction histidine kinase rbh
Tax=RBG_16_Spirochaetes_49_21_curated
RifSed_csp1_19ft_2_scaffold_2017_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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11703..12428
DNA (726bp) protein (242aa)
Putative PAS/PAC sensor protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D3T6_METSW
PAS/PAC sensor protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp1_19ft_2_scaffold_2017_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12716..13303
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12700 RepID=S3Y6V3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KCZ71541.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp1_19ft_2_scaffold_2017_14
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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13344..13712
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E640_METEZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI73062.1}; TaxID=644295 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303).;"
RifSed_csp1_19ft_2_scaffold_2017_15
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13830..14612)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXH1_METHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB49791.1}; Flags: Precursor;; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 /; DMS1).;"
RifSed_csp1_19ft_2_scaffold_2017_16
unknown

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15187..15624
DNA (438bp) protein (146aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_2017_17
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(15522..17591)
DNA (2070bp) protein (690aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46AZ2_METBF
S-layer family duplication domain protein
S-layer family duplication domain protein {ECO:0000313|EMBL:AKB51974.1}; TaxID=1434109 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri str. Wiesmoor.;"
RifSed_csp1_19ft_2_scaffold_2017_18
unknown

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comp(17615..17824)
DNA (210bp) protein (70aa)

This feature has no annotations

Displaying 18 items

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