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RifSed_csp1_19ft_2_scaffold_5504

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_2_scaffold_5504_1

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comp(34..363)
DNA (330bp) protein (110aa)
tetrahydromethanopterin S-methyltransferase subunit B
Tetrahydromethanopterin S-methyltransferase subunit B n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBK6_METEZ
1682553217 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_2

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comp(366..1136)
DNA (771bp) protein (257aa)
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C
UPI0003D1AEC5 related cluster n=1 Tax=unknown RepID=UPI0003D1AEC5
1511040461 Tax=methanoperedens_np-b_24_c_2-complete_final_UNK
RifSed_csp1_19ft_2_scaffold_5504_3

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comp(1133..1858)
DNA (726bp) protein (242aa)
tetrahydromethanopterin S-methyltransferase, subunit D (EC:2.1.1.86)
Tetrahydromethanopterin S-methyltransferase subunit D n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E7Y4_METMS
1511040460 Tax=methanoperedens_np-b_24_c_2-complete_final_UNK
RifSed_csp1_19ft_2_scaffold_5504_4

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comp(1858..2130)
DNA (273bp) protein (91aa)
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E
Tetrahydromethanopterin S-methyltransferase subunit E n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXS5_METHD
1511040459 Tax=methanoperedens_np-b_24_c_2-complete_final_UNK
RifSed_csp1_19ft_2_scaffold_5504_5

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comp(2171..2575)
DNA (405bp) protein (135aa)
tetrahydromethanopterin S-methyltransferase subunit E (EC:2.1.1.86)
Tetrahydromethanopterin S-methyltransferase subunit E n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=MTRE_METBU
1511040459 Tax=methanoperedens_np-b_24_c_2-complete_final_UNK
RifSed_csp1_19ft_2_scaffold_5504_trna_1
unknown

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comp(3118..3191)
DNA (74bp)
transferRNA Thr
RifSed_csp1_19ft_2_scaffold_5504_6

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comp(3240..4775)
DNA (1536bp) protein (512aa)
Protein-export membrane protein SecD
Protein-export membrane protein SecD n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TUC9_METAC
1682552114 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_7

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comp(4772..5704)
DNA (933bp) protein (311aa)
preprotein translocase subunit SecF
Protein-export membrane protein SecF n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MGF3_9EURY
1682552113 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_8

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comp(5795..6874)
DNA (1080bp) protein (360aa)
peptidase M50 rbh
Peptidase M50 n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XP82_METZD rbh
1682553505 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_9
unknown

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6992..7129
DNA (138bp) protein (46aa)

This feature has no annotations

RifSed_csp1_19ft_2_scaffold_5504_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7252..8178)
DNA (927bp) protein (309aa)
107175201 Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp1_19ft_2_scaffold_5504_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8181..9074)
DNA (894bp) protein (298aa)
multidrug ABC transporter ATPase
ABC-type multidrug transport system, ATPase component n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I782_METCZ
107175200 Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp1_19ft_2_scaffold_5504_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9376..9783)
DNA (408bp) protein (136aa)
putative nucleic-acid-binding protein containing a Zn-ribbon
Putative nucleic-acid-binding protein containing a Zn-ribbon n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L279_METHD
A0A062V8R6_9EURY Putative nucleic-acid-binding protein containing a Zn-ribbon {ECO:0000313|EMBL:KCZ72154.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_5504_13

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comp(9786..10955)
DNA (1170bp) protein (390aa)
acetyl-CoA acetyltransferase rbh
Acetyl-CoA acetyltransferase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MPE1_9EURY rbh
1682553507 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10965..11876)
DNA (912bp) protein (304aa)
hypothetical protein
UPF0219 protein Mpsy_1638 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MD03_9EURY
A0A062V480_9EURY UPF0219 protein ANME2D_01556 {ECO:0000256|HAMAP-Rule:MF_01409}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_5504_15

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comp(11886..12005)
DNA (120bp) protein (40aa)
hydroxymethylglutaryl-CoA synthase, putative
UPF0219 protein Metho_2375 n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L0P9_METHD
1511041540 Tax=methanoperedens_np-b_24_c_2-complete_final_UNK
RifSed_csp1_19ft_2_scaffold_5504_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12043..12828)
DNA (786bp) protein (262aa)
XRE family transcriptional regulator
HTH DNA-binding domain protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12UR4_METBU
A0A062UYZ1_9EURY Putative transcriptional regulator {ECO:0000313|EMBL:KCZ72151.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_5504_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12933..13919)
DNA (987bp) protein (329aa)
biotin synthase-related enzyme
Biotin synthase-related enzyme n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BWS6_ANAMD
A0A062V5D0_9EURY Biotin synthase-related enzyme {ECO:0000313|EMBL:KCZ70989.1}; EC=2.8.1.6 {ECO:0000313|EMBL:KCZ70989.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_5504_18

Not on your lists

13960..14637
DNA (678bp) protein (226aa)
phosphodiesterase, MJ0936 family
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035F96BE
1682553665 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_19

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comp(14634..14852)
DNA (219bp) protein (73aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein
4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7V4P2_DESML
1261221069 Tax=Green_Borg_SRVP_2020_100_cm_2_FINAL-FINAL
RifSed_csp1_19ft_2_scaffold_5504_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14886..15848)
DNA (963bp) protein (321aa)
alanine dehydrogenase rbh
UPI0003D1A852 related cluster n=1 Tax=unknown RepID=UPI0003D1A852 rbh
A0A062V0U9_9EURY Alanine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00935}; Short=AlaDH {ECO:0000256|HAMAP-Rule:MF_00935};; EC=1.4.1.1 {ECO:0000256|HAMAP-Rule:MF_00935};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_5504_21
Methanoculleus marisnigri, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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15990..16577
DNA (588bp) protein (196aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CXM4_METMJ
A3CXM4_METMJ Uncharacterized protein {ECO:0000313|EMBL:ABN58124.1}; Flags: Precursor;; TaxID=368407 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus.;" source="Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1).;"
RifSed_csp1_19ft_2_scaffold_5504_22

Not on your lists

16682..17161
DNA (480bp) protein (160aa)
nitrite and sulfite reductase 4Fe-4S region
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6P5P3_9FIRM
1682553671 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_23

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17194..17382
DNA (189bp) protein (63aa)
1682553671 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_24

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17379..18356
DNA (978bp) protein (326aa)
sulfite reductase subunit
Nitrite and sulphite reductase 4Fe-4S subunit id=3761802 bin=GWC2_Deltaproteobacteria_42_51 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
1263472371 Tax=ORANGE_SR-VP_26_10_2019_2_100cm_FINAL
RifSed_csp1_19ft_2_scaffold_5504_25

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18390..19082
DNA (693bp) protein (231aa)
phosphoadenylylsulfate reductase (thioredoxin) (EC:1.8.4.9 1.8.4.8)
Phosphoadenylylsulfate reductase (Thioredoxin) n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAM7_METMS
1682553672 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19084..19563)
DNA (480bp) protein (160aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAL7_METCZ
A0A062VBC2_9EURY Uncharacterized protein {ECO:0000313|EMBL:KCZ72969.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_5504_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19560..20717)
DNA (1158bp) protein (386aa)
EmrB/QacA subfamily drug resistance transporter
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Thermincola potens (strain JR) RepID=D5XB81_THEPJ
A0A062V8X8_9EURY Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:KCZ72968.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp1_19ft_2_scaffold_5504_28

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comp(20849..21382)
DNA (534bp) protein (178aa)
Molybdenum cofactor biosynthesis protein MoaB
Molybdenum cofactor biosynthesis protein B n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TU86_METAC
1682550473 Tax=Black_host_Methanoperedens_contigs_Illumina_by_Np_final
RifSed_csp1_19ft_2_scaffold_5504_29

Not on your lists

comp(21540..21884)
DNA (345bp) protein (115aa)
hypothetical protein
Hypothetical membrane protein, conserved, UPF0132 family n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JIC4_THEKO
1262587598 Tax=Ochre_SR-VP_26_10_2020_2_100CM_FINAL_FINAL
Displaying items 1-30 of 32 in total

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