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RifSed_csp1_19ft_3_scaffold_552

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Displaying items 1-30 of 43 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp1_19ft_3_scaffold_552_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2..400)
DNA (399bp) protein (133aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_552_2
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(405..3311)
DNA (2907bp) protein (969aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IB21_METCZ
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_3_scaffold_552_3
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

3570..3950
DNA (381bp) protein (127aa)
Uncharacterized protein Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T6W4_9EURY
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_19ft_3_scaffold_552_4
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

4123..4899
DNA (777bp) protein (259aa)
Cell division protein FtsZ Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CW20_9EURY
cell division protein FtsZ
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_19ft_3_scaffold_552_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

4990..5409
DNA (420bp) protein (140aa)
UPI0003D1ACDF related cluster Tax=unknown RepID=UPI0003D1ACDF
hypothetical protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_552_6
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

5406..6368
DNA (963bp) protein (321aa)
GTP cyclohydrolase MptA Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HHI6_ACIS0
TIGR00294 family protein
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_3_scaffold_552_7
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(6586..7212)
DNA (627bp) protein (209aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003629E4A
Tetratricopeptide repeat protein
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp1_19ft_3_scaffold_552_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


comp(7151..8764)
DNA (1614bp) protein (538aa)
pheS; phenylalanyl-tRNA ligase subunit alpha (EC:6.1.1.20)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000368930D
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_3_scaffold_552_9
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(8928..10049)
DNA (1122bp) protein (374aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00036EDE49
Tryptophanyl-tRNA synthetase
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_3_scaffold_552_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10159..10656)
DNA (498bp) protein (166aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00037B1960
3-hexulose-6-phosphate isomerase (6-phospho-3-hexuloisomerase) (PHI)
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10701..11924)
DNA (1224bp) protein (408aa)
Xylose isomerase domain protein TIM barrel Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TB69_9EURY
Xylose isomerase domain protein TIM barrel
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


12122..12484
DNA (363bp) protein (121aa)
50S ribosomal protein L18e Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T7N2_9EURY
50S ribosomal protein L18e
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


12489..12902
DNA (414bp) protein (138aa)
50S ribosomal protein L13 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TBX8_9EURY
50S ribosomal protein L13
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_14
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists


13025..13297
DNA (273bp) protein (91aa)
30S ribosomal protein S9 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003827128
rps9p; 30S ribosomal protein S9P
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp1_19ft_3_scaffold_552_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


13302..13493
DNA (192bp) protein (64aa)
DNA-directed RNA polymerase subunit N (EC:2.7.7.6)
DNA-directed RNA polymerase subunit N Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8C3_9EURY
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_trna_1
unknown

Not on your lists

13543..13615
DNA (73bp)
transferRNA Pro
RifSed_csp1_19ft_3_scaffold_552_16
unknown

Not on your lists

comp(13597..13935)
DNA (339bp) protein (113aa)

This feature has no annotations

RifSed_csp1_19ft_3_scaffold_552_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(13938..14705)
DNA (768bp) protein (256aa)
hypothetical protein Tax=Crenarchaeota archaeon SCGC AAA471-L14 RepID=UPI000382E3F5
3-oxoacyl-ACP reductase
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(14933..15871)
DNA (939bp) protein (313aa)
Aldo/keto reductase Tax=Thermoplasmatales archaeon Gpl RepID=T0LX50_9EURY
aldo/keto reductase
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(16025..16465)
DNA (441bp) protein (147aa)
hypothetical protein Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI000369691A
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(16471..17346)
DNA (876bp) protein (292aa)
Ribosomal protein S6 modification protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CA48_MYXFH
ribosomal protein S6 modification protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_552_21
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

17480..17887
DNA (408bp) protein (136aa)
Alpha-L-glutamate ligase Tax=Halobiforma nitratireducens JCM 10879 RepID=M0MEH9_9EURY
alpha-L-glutamate ligase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_552_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

17993..18208
DNA (216bp) protein (72aa)
Small nuclear ribonucleoprotein Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T4A5_9EURY
putative snRNP Sm-like protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

18534..19997
DNA (1464bp) protein (488aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00036B7881
amidophosphoribosyltransferase
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_trna_2
unknown

Not on your lists

20052..20124
DNA (73bp)
transferRNA Ala
RifSed_csp1_19ft_3_scaffold_552_24
R_OP11_Gottesmanbacteria_39_11, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

20360..20917
DNA (558bp) protein (186aa)
ATP-dependent DNA ligase (EC:6.5.1.1) bin=ACD30 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=ACD30 organism_group=OP11 (Microgenomates) organism_desc=OP11
DNA ligase D
Tax=RIFCSPHIGHO2_02_FULL_OP11_Gottesmanbacteria_39_11_curated
RifSed_csp1_19ft_3_scaffold_552_25
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

21345..21758
DNA (414bp) protein (138aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp1_19ft_3_scaffold_552_26
unknown

Not on your lists

comp(21894..22001)
DNA (108bp) protein (36aa)

This feature has no annotations

RifSed_csp1_19ft_3_scaffold_552_27
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

22623..22844
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=Thermoplasmatales archaeon Gpl RepID=T0LK64_9EURY
hypothetical protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp1_19ft_3_scaffold_552_28
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

22844..23098
DNA (255bp) protein (85aa)
RelE protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46DQ3_METBF
RelE protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Displaying items 1-30 of 43 in total

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