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RifSed_csp2_16ft_3_scaffold_2683

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_2683_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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52..1371
DNA (1320bp) protein (440aa)
Signal recognition particle 54 kDa protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNP3_METZD
Signal recognition particle 54 kDa protein {ECO:0000256|HAMAP-Rule:MF_00306}; Short=SRP54 {ECO:0000256|HAMAP-Rule:MF_00306};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
GTP-binding signal recognition particle SRP54 G-domain-containing protein
RifSed_csp2_16ft_3_scaffold_2683_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1446..2642
DNA (1197bp) protein (399aa)
Cell division protein FtsZ Tax=Candidatus Nitrososphaera gargensis RepID=K0IKP2_NITGG
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU003360}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ftsZ2; cell division protein FtsZ
RifSed_csp2_16ft_3_scaffold_2683_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2754..5912
DNA (3159bp) protein (1053aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Isoleucine--tRNA ligase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KX95_METHD
isoleucyl-tRNA synthetase
RifSed_csp2_16ft_3_scaffold_2683_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5909..7075
DNA (1167bp) protein (389aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Probable tRNA sulfurtransferase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXG1_METHD
thiazole biosynthesis/tRNA modification protein ThiI
RifSed_csp2_16ft_3_scaffold_2683_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(7056..7280)
DNA (225bp) protein (75aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2683_6
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7258..7587)
DNA (330bp) protein (110aa)
Cytochrome c biogenesis protein transmembrane region Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SLT0_9DELT
thiol:disulfide interchange protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2683_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7584..7880)
DNA (297bp) protein (99aa)
UPI0003D1B007 related cluster Tax=unknown RepID=UPI0003D1B007
Uncharacterized protein {ECO:0000313|EMBL:KCZ70794.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2683_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7882..8577)
DNA (696bp) protein (232aa)
UPF0278 protein Mzhil_0385 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPD3_METZD
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2683_9
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8660..9841
DNA (1182bp) protein (394aa)
Coenzyme F420 hydrogenase, beta subunit Tax=Methanolobus psychrophilus R15 RepID=K4MBE5_9EURY
Coenzyme F420 hydrogenase subunit beta
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2683_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10697..11071)
DNA (375bp) protein (125aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1JHB2_9ARCH
Putative nucleic acid-binding protein, contains PIN domain {ECO:0000313|EMBL:KCZ70595.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_2683_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11071..11274)
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70596.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_2683_12
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(11608..12576)
DNA (969bp) protein (323aa)
transcriptional regulator Tax=Chlorogloeopsis RepID=UPI0002D7C04E
methylase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2683_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(12996..13235)
DNA (240bp) protein (80aa)
Putative uncharacterized protein Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAM4_METMS
Uncharacterized protein {ECO:0000313|EMBL:KCZ72711.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2683_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(13280..13783)
DNA (504bp) protein (168aa)
aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase regulatory chain Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=PYRI_METTP
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2683_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(13780..14691)
DNA (912bp) protein (304aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZH6_METCG
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2683_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14733..15353)
DNA (621bp) protein (207aa)
Probable RNA 2'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00299}; EC=2.7.1.- {ECO:0000256|HAMAP-Rule:MF_00299};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Probable RNA 2'-phosphotransferase Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12V71_METBU
RNA 2'-phosphotransferase-like protein
RifSed_csp2_16ft_3_scaffold_2683_17
unknown

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comp(15350..15478)
DNA (129bp) protein (43aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_2683_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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15607..16710
DNA (1104bp) protein (368aa)
glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase (NAD(P)+) Tax=uncultured archaeon GZfos1D1 RepID=Q64CM6_9ARCH
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_2683_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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16731..18098
DNA (1368bp) protein (456aa)
Acetyl-CoA synthetase (ADP-forming) alpha subunit {ECO:0000313|EMBL:KCZ72377.1}; EC=6.2.1.13 {ECO:0000313|EMBL:KCZ72377.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
acdA; acetyl-coa synthetase (ADP-forming), alpha subunit (EC:6.2.1.13)
Putative uncharacterized protein Tax=uncultured archaeon GZfos1D1 RepID=Q64CM7_9ARCH
RifSed_csp2_16ft_3_scaffold_2683_20
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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18095..18739
DNA (645bp) protein (215aa)
Putative uncharacterized protein Tax=uncultured archaeon GZfos1D1 RepID=Q64CM8_9ARCH
Acyl-CoA synthetase (NDP forming)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2683_21
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(18747..21038)
DNA (2292bp) protein (764aa)
PAS domain S-box protein Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0FEK1_9LEPT
two component system histidine kinase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_2683_22
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(21045..21401)
DNA (357bp) protein (119aa)
Response regulator receiver protein Tax=Methanolobus psychrophilus R15 RepID=K4MDN4_9EURY
response regulator receiver protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_2683_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21487..22233)
DNA (747bp) protein (249aa)
Lipoate-protein ligase A {ECO:0000313|EMBL:KCZ72719.1}; EC=2.7.7.63 {ECO:0000313|EMBL:KCZ72719.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Lipoate-protein ligase A, C-terminal bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative biotin/lipoate A/B protein ligase
RifSed_csp2_16ft_3_scaffold_2683_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(22230..22511)
DNA (282bp) protein (94aa)
Bacterial lipoate protein ligase C-terminus {ECO:0000313|EMBL:KCZ72718.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Uncharacterized protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
RifSed_csp2_16ft_3_scaffold_2683_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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22692..22889
DNA (198bp) protein (66aa)
Type I restriction-modification system methyltransferase subunit {ECO:0000313|EMBL:KCZ72007.1}; EC=2.1.1.72 {ECO:0000313|EMBL:KCZ72007.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
adenine-specific DNA-methyltransferase (EC:2.1.1.72)
membrane protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000377D74A
Displaying 25 items

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