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RifSed_csp2_16ft_3_scaffold_4305

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_4305_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

2..184
DNA (183bp) protein (61aa)
Isoprenylcysteine carboxyl methyltransferase bin=GWA2_OP3_52_12 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
protein-S-isoprenylcysteine methyltransferase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4305_2
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

181..984
DNA (804bp) protein (268aa)
Cytochrome oxidase subunit I-like protein Tax=Methanosarcina mazei RepID=M1QIN7_METMZ
cytochrome oxidase subunit I -like protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4305_3
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

987..1280
DNA (294bp) protein (98aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4305_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

1286..2125
DNA (840bp) protein (280aa)
UPI0003D1C401 related cluster Tax=unknown RepID=UPI0003D1C401
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4305_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2122..3528)
DNA (1407bp) protein (469aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71078.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
4Fe-4S ferredoxin iron-sulfur binding domain protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4305_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(3518..4906)
DNA (1389bp) protein (463aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70750.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4305_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4918..5154)
DNA (237bp) protein (79aa)
SirA family protein Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAN3_METMS
Putative redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:KCZ72815.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SirA family protein
RifSed_csp2_16ft_3_scaffold_4305_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5154..5585)
DNA (432bp) protein (144aa)
Putative peroxiredoxin {ECO:0000313|EMBL:KCZ70947.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4305_9
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5533..5904)
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PYL7_METTM
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4305_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(5915..6241)
DNA (327bp) protein (109aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4305_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6372..6974)
DNA (603bp) protein (201aa)
Lrp/AsnC family transcription regulator Tax=Haloferax mucosum ATCC BAA-1512 RepID=M0I291_9EURY
Transcriptional regulator {ECO:0000313|EMBL:KCZ72985.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
transcription regulator
RifSed_csp2_16ft_3_scaffold_4305_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7033..7728)
DNA (696bp) protein (232aa)
Cytochrome c assembly protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9L0_METEZ
ABC-type transport system involved in cytochrome c biogenesis, permease component {ECO:0000313|EMBL:KCZ70410.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cytochrome c assembly protein
RifSed_csp2_16ft_3_scaffold_4305_13
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

7874..8542
DNA (669bp) protein (223aa)
Uncharacterized protein Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1Y716_ANEAE
hypothetical protein
Tax=RBG_16_Chloroflexi_50_9_curated
RifSed_csp2_16ft_3_scaffold_4305_14
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

9408..10745
DNA (1338bp) protein (446aa)
Cu2+-exporting ATPase (EC:3.6.3.4)
Cu2+-exporting ATPase {ECO:0000313|EMBL:BAJ47091.1}; EC=3.6.3.4 {ECO:0000313|EMBL:BAJ47091.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarchaeum subterraneum.;"
Cu2+-exporting ATPase Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N472_9ARCH
RifSed_csp2_16ft_3_scaffold_4305_15
unknown

Not on your lists

10742..10987
DNA (246bp) protein (82aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4305_16
Desulfovibrio piezophilus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11015..11641
DNA (627bp) protein (209aa)
Uncharacterized protein Tax=Desulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30) RepID=M1WPN3_DESPC
membrane protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CCH48474.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30).;"
RifSed_csp2_16ft_3_scaffold_4305_17
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11844..13019)
DNA (1176bp) protein (392aa)
Coenzyme F420 hydrogenase, beta subunit Tax=Methanolobus psychrophilus R15 RepID=K4MBE5_9EURY
coenzyme F420 hydrogenase, beta subunit
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4305_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13050..13856)
DNA (807bp) protein (269aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RYM6_FERPA
Fe-S-cluster-containing hydrogenase subunit {ECO:0000313|EMBL:KCZ73531.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
4Fe-4S ferredoxin iron-sulfur binding domain protein
RifSed_csp2_16ft_3_scaffold_4305_19
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(13895..14386)
DNA (492bp) protein (164aa)
Cytochrome b6-f complex iron-sulfur subunit bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
cytochrome b/b6 complex, iron-sulfur cluster-binding subunit
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4305_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14572..14700)
DNA (129bp) protein (43aa)
ABC-type antimicrobial peptide transport system ATPase component Tax=Clostridium sp. CAG:1193 RepID=R5IT99_9CLOT
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:KCZ73042.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
lipoprotein ABC transporter ATP-binding protein
RifSed_csp2_16ft_3_scaffold_4305_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14850..14948)
DNA (99bp) protein (33aa)
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:KCZ73042.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_4305_22

Not on your lists

15105..15314
DNA (210bp) protein (70aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1JH71_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:CBH37879.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4305_23
R_OD1_Falkowbacteria_39_17, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

15714..15944
DNA (231bp) protein (77aa)
Uncharacterized protein Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=G8ZKE0_PYRAB
Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_17_curated
RifSed_csp2_16ft_3_scaffold_4305_24
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

15945..16274
DNA (330bp) protein (110aa)
Protein containing Nucleotide binding protein, PINc domain Tax=sediment metagenome RepID=D9PJC5_9ZZZZ
hypothetical protein
Tax=BJP_IG2158_Thermoplasmatales_53_16
RifSed_csp2_16ft_3_scaffold_4305_25
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

16663..17163
DNA (501bp) protein (167aa)
Glr3535 protein bin=GWF2_OP3_43_52 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
metal-dependent hydrolase
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4305_26
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17150..17491
DNA (342bp) protein (114aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46A01_METBF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ71291.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri (strain Fusaro / DSM 804).;"
RifSed_csp2_16ft_3_scaffold_4305_27
unknown

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18164..19222
DNA (1059bp) protein (353aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4305_trna_1
unknown

Not on your lists

comp(19408..19480)
DNA (73bp)
transferRNA Gln
RifSed_csp2_16ft_3_scaffold_4305_28
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19526..20431)
DNA (906bp) protein (302aa)
Histone deacetylase family protein Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WN83_METH6
Deacetylase, histone deacetylase/acetoin utilization protein {ECO:0000313|EMBL:KCZ73448.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Histone deacetylase family protein
RifSed_csp2_16ft_3_scaffold_4305_29
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(20578..20967)
DNA (390bp) protein (130aa)
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BW82_METCG
pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying items 1-30 of 41 in total

View Taxonomy