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RifSed_csp2_16ft_3_scaffold_4563

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_4563_1
unknown

Not on your lists

comp(724..921)
DNA (198bp) protein (66aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_4563_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(926..1120)
DNA (195bp) protein (65aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4563_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(1208..1411)
DNA (204bp) protein (68aa)
Uncharacterized protein Tax=Methanolobus psychrophilus R15 RepID=K4MEF6_9EURY
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4563_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1430..1642)
DNA (213bp) protein (71aa)
Uncharacterized protein Tax=Methanosarcina RepID=Q8TUK8_METAC
Putative RNA-binding protein, contains TRAM domain {ECO:0000313|EMBL:KCZ71833.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
translation initiation factor IF-2 subunit beta
RifSed_csp2_16ft_3_scaffold_4563_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


2049..3056
DNA (1008bp) protein (336aa)
50S ribosomal protein L3 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=RL3_METMA
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpl3p; 50S ribosomal protein L3P
RifSed_csp2_16ft_3_scaffold_4563_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


3062..3814
DNA (753bp) protein (251aa)
UPI0003D1C13E related cluster Tax=unknown RepID=UPI0003D1C13E
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LSU ribosomal protein L1e (L4p)
RifSed_csp2_16ft_3_scaffold_4563_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


3811..4056
DNA (246bp) protein (82aa)
50S ribosomal protein L23P Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAI1_METCZ
50S ribosomal protein L23P {ECO:0000256|HAMAP-Rule:MF_01369}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpl23p; 50S ribosomal protein L23
RifSed_csp2_16ft_3_scaffold_4563_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


4066..4776
DNA (711bp) protein (237aa)
UPI0003D1C77A related cluster Tax=unknown RepID=UPI0003D1C77A
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
LSU ribosomal protein L2P
RifSed_csp2_16ft_3_scaffold_4563_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


4783..5196
DNA (414bp) protein (138aa)
30S ribosomal protein S19P Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMQ8_METZD
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
30S ribosomal protein S19
RifSed_csp2_16ft_3_scaffold_4563_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


5196..5648
DNA (453bp) protein (151aa)
50S ribosomal protein L22P Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=RL22_METTP
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
50S ribosomal protein L22
RifSed_csp2_16ft_3_scaffold_4563_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


5648..6526
DNA (879bp) protein (293aa)
30S ribosomal protein S3 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=RS3_METBF
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SSU ribosomal protein S3e (S3p)
RifSed_csp2_16ft_3_scaffold_4563_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


6526..6729
DNA (204bp) protein (68aa)
50S ribosomal protein L29P Tax=Methanosarcina mazei RepID=RL29_METMA
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpmC; 50S ribosomal protein L29
RifSed_csp2_16ft_3_scaffold_4563_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

6726..7037
DNA (312bp) protein (104aa)
ribonuclease P protein component 1 (EC:3.1.26.5)
Ribonuclease P protein component 1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=RNP1_METAC
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4563_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


7050..7373
DNA (324bp) protein (108aa)
30S ribosomal protein S17P Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZV4_METCG
Archaeal ribosomal protein S17P {ECO:0000313|EMBL:KCZ73299.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpsQ; 30S ribosomal protein S17
RifSed_csp2_16ft_3_scaffold_4563_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


7370..7768
DNA (399bp) protein (133aa)
50S ribosomal protein L14 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZV3_METCG
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rplN; 50S ribosomal protein L14b/L23e
RifSed_csp2_16ft_3_scaffold_4563_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists


7778..8119
DNA (342bp) protein (114aa)
50S ribosomal protein L24P Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=RL24_METBF
LSU ribosomal protein L24P
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4563_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8120..8812
DNA (693bp) protein (231aa)
30S ribosomal protein S4e Tax=Methanolobus psychrophilus R15 RepID=K4MD48_9EURY
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
30S ribosomal protein S4e
RifSed_csp2_16ft_3_scaffold_4563_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


8813..9319
DNA (507bp) protein (169aa)
50S ribosomal protein L5 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E6R4_METMS
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
50S ribosomal protein L5P
RifSed_csp2_16ft_3_scaffold_4563_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


9320..9472
DNA (153bp) protein (51aa)
30S ribosomal protein S14 type Z Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAJ4_METCZ
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rps14p; 30S ribosomal protein S14
RifSed_csp2_16ft_3_scaffold_4563_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


9482..9871
DNA (390bp) protein (130aa)
UPI0003D1C704 related cluster Tax=unknown RepID=UPI0003D1C704
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpsH; 30S ribosomal protein S8
RifSed_csp2_16ft_3_scaffold_4563_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


9881..10411
DNA (531bp) protein (177aa)
UPI0003D1C1F2 related cluster Tax=unknown RepID=UPI0003D1C1F2
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
50S ribosomal protein L6
RifSed_csp2_16ft_3_scaffold_4563_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10411..10899
DNA (489bp) protein (163aa)
50S ribosomal protein L32e Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZT4_METBU
50S ribosomal protein L32e {ECO:0000256|HAMAP-Rule:MF_00810}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpl32e; 50S ribosomal protein L32e
RifSed_csp2_16ft_3_scaffold_4563_23
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

10901..11353
DNA (453bp) protein (151aa)
50S ribosomal protein L19e Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PV32_METMA
rpl19e; 50S ribosomal protein L19
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4563_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


11356..11874
DNA (519bp) protein (173aa)
50S ribosomal protein L18P Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMP5_METZD
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
50S ribosomal protein L18
RifSed_csp2_16ft_3_scaffold_4563_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


11880..12500
DNA (621bp) protein (207aa)
30S ribosomal protein S5 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=RS5_METBU
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rps5p; 30S ribosomal protein S5P
RifSed_csp2_16ft_3_scaffold_4563_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


12501..12962
DNA (462bp) protein (154aa)
50S ribosomal protein L30P Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAK1_METCZ
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rpl30p; 50S ribosomal protein L30
RifSed_csp2_16ft_3_scaffold_4563_27
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists


12968..13423
DNA (456bp) protein (152aa)
50S ribosomal protein L15P Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XLT7_METZD
rpl15p; 50S ribosomal protein L15
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_4563_28
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13429..14913
DNA (1485bp) protein (495aa)
UPI0003D1A578 related cluster Tax=unknown RepID=UPI0003D1A578
preprotein translocase subunit SecY
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_4563_29
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14916..15491)
DNA (576bp) protein (192aa)
Uncharacterized protein Tax=Methanosarcina mazei Tuc01 RepID=M1P9U0_METMZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ73284.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_4563_30
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15488..16393)
DNA (906bp) protein (302aa)
Triphosphoribosyl-dephospho-CoA synthetase {ECO:0000313|EMBL:KCZ73283.1}; EC=2.4.2.52 {ECO:0000313|EMBL:KCZ73283.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Putative triphosphoribosyl-dephospho-CoA synthase Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46C40_METBF
Triphosphoribosyl-dephospho-CoA synthetase
Displaying items 1-30 of 32 in total

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