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RifSed_csp2_16ft_3_scaffold_5857

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_5857_1
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(188..676)
DNA (489bp) protein (163aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72095.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_5857_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

775..1512
DNA (738bp) protein (246aa)
DNA polymerase sliding clamp Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KVK8_METHD
DNA polymerase sliding clamp {ECO:0000256|HAMAP-Rule:MF_00317, ECO:0000256|RuleBase:RU003673}; Proliferating cell nuclear antigen homolog {ECO:0000256|HAMAP-Rule:MF_00317}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
proliferating cell nuclear antigen PCNA
RifSed_csp2_16ft_3_scaffold_5857_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1516..2553
DNA (1038bp) protein (346aa)
DNA primase large subunit PriL Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E959_METEZ
DNA primase large subunit PriL {ECO:0000256|HAMAP-Rule:MF_00701}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
DNA primase large subunit
RifSed_csp2_16ft_3_scaffold_5857_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2534..3559
DNA (1026bp) protein (342aa)
TrkA-N domain protein Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RYY7_FERPA
Exopolyphosphatase-like enzyme {ECO:0000313|EMBL:KCZ73150.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
TrkA-N domain-containing protein
RifSed_csp2_16ft_3_scaffold_5857_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3715..3840)
DNA (126bp) protein (42aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_5857_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(3907..4119)
DNA (213bp) protein (71aa)
ThiamineS protein Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KPW8_ARCVS
sulfur carrier protein ThiS
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5857_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4116..4262)
DNA (147bp) protein (49aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73147.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_5857_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(4358..5434)
DNA (1077bp) protein (359aa)
UPI0003D1B632 related cluster Tax=unknown RepID=UPI0003D1B632
4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5857_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5529..6179
DNA (651bp) protein (217aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5857_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6176..6766
DNA (591bp) protein (197aa)
Putative RNA methylase {ECO:0000313|EMBL:KCZ70676.1}; EC=2.1.1.- {ECO:0000313|EMBL:KCZ70676.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribosomal L11 methyltransferase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9E5_METEZ
ribosomal L11 methyltransferase
RifSed_csp2_16ft_3_scaffold_5857_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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6951..7520
DNA (570bp) protein (190aa)
Putative RNA-binding protein Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I9N2_METCZ
RNA-binding protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5857_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7529..7807
DNA (279bp) protein (93aa)
DNA-directed RNA polymerase subunit L {ECO:0000256|HAMAP-Rule:MF_00261}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00261};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1C250 related cluster Tax=unknown RepID=UPI0003D1C250
RNA polymerase dimerization
RifSed_csp2_16ft_3_scaffold_5857_13
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7785..8258)
DNA (474bp) protein (158aa)
Uncharacterized protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZN1_METPS
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_5857_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8251..8733)
DNA (483bp) protein (161aa)
Uncharacterized protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L0F0_METHD
Uncharacterized protein {ECO:0000313|EMBL:KCZ70680.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_5857_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

8807..9973
DNA (1167bp) protein (389aa)
Geranylgeranyl diphosphate reductase (EC:1.3.1.83)
Uncharacterized protein Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PRY9_METMA
Geranylgeranyl reductase family protein {ECO:0000313|EMBL:KCZ70681.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_5857_16
unknown

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10027..10239
DNA (213bp) protein (71aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_5857_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(10245..11741)
DNA (1497bp) protein (499aa)
Uncharacterized protein Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQ98_METZD
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_5857_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12133..13494
DNA (1362bp) protein (454aa)
Coenzyme F420-reducing hydrogenase, beta subunit {ECO:0000313|EMBL:KCZ71672.1}; EC=1.12.98.1 {ECO:0000313|EMBL:KCZ71672.1};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Coenzyme F420-dependent oxidoreductase Tax=uncultured archaeon GZfos35B7 RepID=Q649E0_9ARCH
coenzyme F420 hydrogenase/dehydrogenase subunit beta domain-containing protein
RifSed_csp2_16ft_3_scaffold_5857_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13559..14728)
DNA (1170bp) protein (390aa)
pan-1; proteasome-activating nucleotidase (EC:3.6.1.3)
26S proteasome regulatory subunit (Proteasome-activating nucleotidase) Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W546_UNCMA
26S proteasome subunit P45 family {ECO:0000313|EMBL:KCZ72996.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_5857_20
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

15091..15450
DNA (360bp) protein (120aa)
Uncharacterized protein Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BJ48_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK60486.1}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus sulfaticallidus PM70-1.;"
RifSed_csp2_16ft_3_scaffold_5857_21
unknown

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comp(15436..15540)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 21 items

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