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RifSed_csp2_19ft_3_scaffold_1026

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Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_19ft_3_scaffold_1026_1
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

1..774
DNA (774bp) protein (258aa)
trmL; tRNA (cytidine(34)-2'-O)-methyltransferase (EC:2.1.1.207)
RNA methyltransferase, TrmH family, group 1 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T502_9EURY
Tax=RBG_16_Euryarchaeota_68_13_curated
RifSed_csp2_19ft_3_scaffold_1026_2
unknown

Not on your lists

811..1185
DNA (375bp) protein (125aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_1026_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(1182..2204)
DNA (1023bp) protein (341aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.59)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035FE407
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(2308..3300)
DNA (993bp) protein (331aa)
cytidyltransferase-related domain protein (EC:2.7.7.3)
Cytidyltransferase-related domain protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IGX8_ACIB4
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_5
unknown

Not on your lists

comp(3509..3691)
DNA (183bp) protein (61aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_1026_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

3706..4641
DNA (936bp) protein (312aa)
Transcription initiation factor IIB n=1 Tax=Thermoplasmatales archaeon BRNA1 RepID=M4YTY3_9EURY
Transcription initiation factor IIB (TFIIB)
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(4676..5581)
DNA (906bp) protein (302aa)
yddE; isomerase (EC:5.1.-.-)
Uncharacterized isomerase id=4729345 bin=GWC2_Chloroflexi_73_18 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

5698..5934
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon A-plasma RepID=T0M2K5_9EURY
Tax=RBG_16_Euryarchaeota_67_27_curated
RifSed_csp2_19ft_3_scaffold_1026_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5939..6199
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon Gpl RepID=T0LIV7_9EURY
RelE protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_10
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6262..7473
DNA (1212bp) protein (404aa)
aminotransferase n=1 Tax=Zavarzinella formosa RepID=UPI000300179B
class I and II aminotransferase
Tax=RBG_16_Deltaproteobacteria_49_23_curated
RifSed_csp2_19ft_3_scaffold_1026_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

7470..9008
DNA (1539bp) protein (513aa)
Amidohydrolase n=1 Tax=Halorubrum hochstenium ATCC 700873 RepID=M0F1Y4_9EURY rbh
amidohydrolase rbh
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

9184..9927
DNA (744bp) protein (248aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JW56_STREN
HAD-superfamily hydrolase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp2_19ft_3_scaffold_1026_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(9902..10957)
DNA (1056bp) protein (352aa)
tRNA splicing endonuclease (EC:3.1.27.9) rbh
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036229E2
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
RifSed_csp2_19ft_3_scaffold_1026_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

11148..12089
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037599EB
putative transcriptional regulator
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

12091..12702
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TBC1_9EURY
unknown product
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(12711..15836)
DNA (3126bp) protein (1042aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

16019..17116
DNA (1098bp) protein (366aa)
ATPase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5I9H9_ACIB4
ATPase
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(17113..18078)
DNA (966bp) protein (322aa)
multi-sensor signal transduction histidine kinase
Multi-sensor hybrid histidine kinase id=2650861 bin=GWF2_Methylomirabilis_70_14 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_19
unknown

Not on your lists

18188..18346
DNA (159bp) protein (53aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_1026_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

18389..18682
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=unclassified Thermoplasmatales RepID=M7TUN4_9EURY
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

18991..20862
DNA (1872bp) protein (624aa)
CAAX amino terminal protease family protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8V9_9EURY
CAAX amino terminal protease family protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(20863..21255)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TBK1_9EURY
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

21351..22862
DNA (1512bp) protein (504aa)
DNA polymerase II small subunit (EC:2.7.7.7)
DNA polymerase D small subunit (DPS) n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T825_9EURY
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_24
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

23380..23631
DNA (252bp) protein (84aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
RifSed_csp2_19ft_3_scaffold_1026_25
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

23656..23943
DNA (288bp) protein (96aa)
Signal peptidase I n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=D3TB79_ACIB4
signal peptidase I
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Displaying 25 items

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