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RifSed_csp2_19ft_3_scaffold_5264

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_19ft_3_scaffold_5264_1
GWC1_CPR1_49_13, CPR1, Bacteria

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2..769
DNA (768bp) protein (256aa)
alanyl-tRNA synthetase AlaRS (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=14423872 bin=bin11_novelCP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin11_novelCP organism_group=Unknown_CP
Alanine-tRNA ligase {ECO:0000313|EMBL:KKW05950.1}; TaxID=1618342 species="Bacteria; candidate division CPR1.;" source="candidate division CPR1 bacterium GW2011_GWC1_49_13.;"
alanine--tRNA ligase
RifSed_csp2_19ft_3_scaffold_5264_2
GWB1_OP11_43_11, Gottesmanbacteria, Microgenomates, Bacteria

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792..2252
DNA (1461bp) protein (487aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS86893.1}; TaxID=1618446 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWB1_43_11.;"
seg 390..411 id=43154 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
RifSed_csp2_19ft_3_scaffold_5264_3
R_RIF_OP11_03_50_28, RIF-OP11-3, Microgenomates, Bacteria

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2273..3046
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DB09_9BACT
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_50_28_curated
RifSed_csp2_19ft_3_scaffold_5264_4
R_RIF_OP11_02_38_20, RIF-OP11-2, Microgenomates, Bacteria

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3094..3678
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Microgenomates bacterium SCGC AAA255-J07 RepID=UPI000366BD8B
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_02_38_20_curated
RifSed_csp2_19ft_3_scaffold_5264_5
R_OP11_Woesebacteria_39_25, Woesebacteria, Microgenomates, Bacteria

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3680..4078
DNA (399bp) protein (133aa)
holliday junction resolvase (EC:3.1.-.-)
Putative Holliday junction resolvase id=4620595 bin=GWF2_CPR3_35_18 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=GWF2_CPR3_35_18 organism_group=CPR3
Tax=RIFCSPLOWO2_01_FULL_OP11_Woesebacteria_39_25_curated
RifSed_csp2_19ft_3_scaffold_5264_6
R_OP11_Roizmanbacteria_45_11, Roizmannbacteria, Microgenomates, Bacteria

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4053..5315
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FS62_9BACT
thymidine phosphorylase
Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_45_11_curated
RifSed_csp2_19ft_3_scaffold_5264_7
GWB1_OP11_43_11, Gottesmanbacteria, Microgenomates, Bacteria

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5312..6283
DNA (972bp) protein (324aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2D1N7_9BACT
Aminodeoxychorismate lyase {ECO:0000313|EMBL:KKS86888.1}; TaxID=1618446 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWB1_43_11.;"
YceG family protein
RifSed_csp2_19ft_3_scaffold_5264_8
GWA1_OP11_48_13, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

6452..9397
DNA (2946bp) protein (982aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2BEP6_9BACT
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKU95879.1}; TaxID=1618439 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA1_48_13.;"
RifSed_csp2_19ft_3_scaffold_5264_9
RBG_13_OP11_40_7b_curated, Microgenomates, Bacteria

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9354..9806
DNA (453bp) protein (151aa)
DNA-directed RNA polymerase subunit beta n=1 Tax=uncultured bacterium RepID=K2ETF0_9BACT
rpoB; DNA-directed RNA polymerase subunit beta
Tax=RBG_13_OP11_40_7b_curated
RifSed_csp2_19ft_3_scaffold_5264_10
GWA2_OP11_nov_42_16, Gottesmanbacteria, Microgenomates, Bacteria

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9809..10825
DNA (1017bp) protein (339aa)
DNA-directed RNA polymerase subunit beta' n=1 Tax=uncultured bacterium RepID=K2B2C3_9BACT
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKS41734.1}; TaxID=1618441 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA2_42_16.;"
hypothetical protein
RifSed_csp2_19ft_3_scaffold_5264_11
GWA2_OP11_41_24, Curtissbacteria, Microgenomates, Bacteria

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10876..13464
DNA (2589bp) protein (863aa)
nca:Noca_0712 DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] id=74693 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKS04744.1}; TaxID=1618411 species="Bacteria; Microgenomates.;" source="Microgenomates (Curtissbacteria) bacterium GW2011_GWA2_41_24.;"
RifSed_csp2_19ft_3_scaffold_5264_12
R_OP11_Gottesmanbacteria_39_10, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists


13506..13958
DNA (453bp) protein (151aa)
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=15191870 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
30S ribosomal protein S12
Tax=RIFCSPHIGHO2_01_FULL_OP11_Gottesmanbacteria_39_10_curated
RifSed_csp2_19ft_3_scaffold_5264_13
R_OP11_43_14, Microgenomates, Bacteria

Not on your lists


13951..14430
DNA (480bp) protein (160aa)
30S ribosomal protein S7 n=1 Tax=uncultured bacterium RepID=K2CFZ4_9BACT
rpsG; 30S ribosomal protein S7
Tax=RIFCSPLOWO2_01_FULL_OP11_43_14_curated
RifSed_csp2_19ft_3_scaffold_5264_14
R_OP11_Gottesmanbacteria_39_10, Gottesmanbacteria, Microgenomates, Bacteria

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14507..16600
DNA (2094bp) protein (698aa)
translation elongation factor G; K02355 elongation factor G id=15191862 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
translation elongation factor G
Tax=RIFCSPHIGHO2_01_FULL_OP11_Gottesmanbacteria_39_10_curated
RifSed_csp2_19ft_3_scaffold_5264_15
R_RIF_OP11_01_40_20, RIF-OP11-1, Microgenomates, Bacteria

Not on your lists

16641..17825
DNA (1185bp) protein (395aa)
afw:Anae109_1910 elongation factor Tu (EC:2.7.7.4); K02358 elongation factor EF-Tu [EC:3.6.5.3] alias= id=3239613 bin=GWC1_TM7_41_48 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=GWC1_TM7_41_48 organism_group=TM7 rbh
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_01_40_20_curated
RifSed_csp2_19ft_3_scaffold_5264_16
R_OP11_Beckwithbacteria_49_39, Beckwithbacteria, Microgenomates, Bacteria

Not on your lists


17891..18151
DNA (261bp) protein (87aa)
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 id=15191860 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
ribosomal protein S10, bacterial/organelle
Tax=RIFCSPHIGHO2_01_FULL_OP11_Beckwithbacteria_49_39_curated
RifSed_csp2_19ft_3_scaffold_5264_17
RBG_19FT_COMBO_OP11_39_10_curated, Microgenomates, Bacteria

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18215..18865
DNA (651bp) protein (217aa)
50S ribosomal protein L3 n=1 Tax=Candidatus Microgenomatus auricola SCGC AAA011-E14 RepID=UPI00035F1C59
50S ribosomal protein L3
Tax=RBG_19FT_COMBO_OP11_39_10_curated
RifSed_csp2_19ft_3_scaffold_5264_18
R_OP11_Levybacteria_36_8b, Levybacteria, Microgenomates, Bacteria

Not on your lists


18865..19551
DNA (687bp) protein (229aa)
50S ribosomal protein L4 n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A2Y4_MAHA5
50S ribosomal protein L4
Tax=RIFCSPLOWO2_02_FULL_OP11_Levybacteria_36_8b_curated
RifSed_csp2_19ft_3_scaffold_5264_19
R_OP11_Gottesmanbacteria_40_13, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists


19530..19823
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RL23_CARHZ
rplW; 50S ribosomal protein L23
Tax=RIFCSPHIGHO2_02_FULL_OP11_Gottesmanbacteria_40_13_curated
RifSed_csp2_19ft_3_scaffold_5264_20
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19823..20650
DNA (828bp) protein (276aa)
50S ribosomal protein L2 n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M2H0_CLOCD
50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
RifSed_csp2_19ft_3_scaffold_5264_21
R_OP11_Beckwithbacteria_49_39, Beckwithbacteria, Microgenomates, Bacteria

Not on your lists


20650..20931
DNA (282bp) protein (94aa)
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=15191855 bin=GWC1_OP11_49_16_COMPLETE species=RAAC19 genus=RAAC19 taxon_order=RAAC19 taxon_class=RAAC19 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
30S ribosomal protein S19
Tax=RIFCSPHIGHO2_01_FULL_OP11_Beckwithbacteria_49_39_curated
RifSed_csp2_19ft_3_scaffold_5264_22
GWA2_OP11_41_12, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists


20974..21624
DNA (651bp) protein (217aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GTZ3_9ZZZZ
30S ribosomal protein S3 {ECO:0000313|EMBL:KKR88513.1}; TaxID=1618440 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA2_41_12.;"
30S ribosomal protein S3
RifSed_csp2_19ft_3_scaffold_5264_23
RHI_OP11_Curtissbacteria_41_17, Curtissbacteria, Microgenomates, Bacteria

Not on your lists


21628..22047
DNA (420bp) protein (140aa)
50S ribosomal protein L16 n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=RL16_PELCD
rplP; 50S ribosomal protein L16
Tax=RIFCSPHIGHO2_12_FULL_OP11_Curtissbacteria_41_17_curated
RifSed_csp2_19ft_3_scaffold_5264_24
unknown

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22037..22240
DNA (204bp) protein (68aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_5264_25
GWA1_OP11_43_11, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists


22245..22619
DNA (375bp) protein (125aa)
50S ribosomal protein L14 {ECO:0000313|EMBL:KKS84634.1}; TaxID=1618436 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA1_43_11.;"
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=15191849 bin=GWC1_OP11_49_16_COMPLETE species=RAAC19 genus=RAAC19 taxon_order=RAAC19 taxon_class=RAAC19 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
rplN; 50S ribosomal protein L14
RifSed_csp2_19ft_3_scaffold_5264_26
RBG_13_OP11_Beckwithbacteria_35_6_curated, Beckwithbacteria, Microgenomates, Bacteria

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22622..22951
DNA (330bp) protein (110aa)
50S ribosomal protein L24 id=1962997 bin=GWE2_CPR3_35_7 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
50S ribosomal protein L24
Tax=RBG_13_OP11_Beckwithbacteria_35_6_curated
RifSed_csp2_19ft_3_scaffold_5264_27
Thermoanaerobacterium aotearoense, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


22951..23508
DNA (558bp) protein (186aa)
50S ribosomal protein L5 n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VU44_THESW
50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1421016 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium aotearoense SCUT27.;"
RifSed_csp2_19ft_3_scaffold_5264_28
R_RIF_OD1_07_45_25, RIF-OD1-7, Parcubacteria, Bacteria

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23708..24106
DNA (399bp) protein (133aa)
30S ribosomal protein S8 id=1814612 bin=GWA2_TM6_36_9 species=GWA2_TM6_36_9 genus=GWA2_TM6_36_9 taxon_order=GWA2_TM6_36_9 taxon_class=GWA2_TM6_36_9 phylum=TM6 tax=GWA2_TM6_36_9 organism_group=TM6
30S ribosomal protein S8
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_45_25_curated
RifSed_csp2_19ft_3_scaffold_5264_29
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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24138..24551
DNA (414bp) protein (138aa)
50S ribosomal protein L6 n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P922_DEFDS
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=639282 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC; 101012 / SSM1).;"
Displaying 29 items

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