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ACD1_18

Alias: ACD1_1995.36946.85

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD1_18_1

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comp(391..738)
DNA (348bp) protein (116aa)
rplT; 50S ribosomal protein L20
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=54 to=70 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=114 evalue=3.4e-41 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=2 to=108 evalue=1.6e-35 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD1_18_2

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comp(849..1055)
DNA (207bp) protein (69aa)
seg (db=Seg db_id=seg from=3 to=18)
L35p-like (db=superfamily db_id=SSF143034 from=2 to=65 evalue=1.6e-14)
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=2 to=64 evalue=2.7e-11 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=2 to=61 evalue=7.2e-11 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD1_18_3
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(1131..1568)
DNA (438bp) protein (146aa)
infC; translation initiation factor IF-3
seg (db=Seg db_id=seg from=47 to=58)
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=1 to=139 evalue=1.7e-29 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=1 to=142 evalue=1.2e-25 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD1_18_4
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

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1851..1955
DNA (105bp) protein (35aa)
1851..1955 + (rbs_motif=TAAAA rbs_spacer=10bp)
ACD1_18_5
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

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comp(2578..3024)
DNA (447bp) protein (149aa)
smpB; ssrA RNA (tmRNA)-binding protein
SSRP (db=PatternScan db_id=PS01317 from=22 to=34 evalue=0.0 interpro_id=IPR020081 interpro_description=SsrA-binding protein, conserved site)
smpB: SsrA-binding protein (db=HMMTigr db_id=TIGR00086 from=3 to=146 evalue=1.6e-65 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
Small protein B (SmpB) (db=superfamily db_id=SSF74982 from=1 to=128 evalue=1.1e-41 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
ACD1_18_6

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3254..3670
DNA (417bp) protein (139aa)
DNA-binding response regulator
Two-component system response regulator n=3 Tax=Bacteria RepID=C3RL30_9MOLU (db=UNIREF evalue=5.0e-18 bit_score=93.2 identity=44.17 coverage=81.294964028777)
CheY-like (db=superfamily db_id=SSF52172 from=3 to=127 evalue=5.1e-32 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=6 to=122 evalue=9.3e-29 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD1_18_7
GWC2_OD1_37_73, Moranbacteria, Parcubacteria, Bacteria

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4147..5574
DNA (1428bp) protein (476aa)
peptidase, U32 family
Peptidase family U32 family protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SC02_ACIJO (db=UNIREF evalue=9.0e-76 bit_score=288.0 identity=39.08 coverage=87.8151260504202)
seg (db=Seg db_id=seg from=324 to=337)
seg (db=Seg db_id=seg from=19 to=30)
ACD1_18_8
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

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5703..6686
DNA (984bp) protein (328aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TEW4_HELMI (db=UNIREF evalue=4.0e-87 bit_score=325.0 identity=48.28 coverage=96.0365853658537)
coiled-coil (db=Coil db_id=coil from=22 to=50 evalue=NA)
ACD1_18_9
GWC1_OD1_38_22, Parcubacteria, Bacteria

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6796..8064
DNA (1269bp) protein (423aa)
peptidase M16 domain-containing protein
peptidase M16 domain-containing protein
INSULINASE (db=PatternScan db_id=PS00143 from=34 to=57 evalue=0.0 interpro_id=IPR001431 interpro_description=Peptidase M16, zinc-binding site GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
METALLOPROTEASE (db=HMMPanther db_id=PTHR11851 from=29 to=420 evalue=8.7e-102)
ACD1_18_10
GWD2_OD1_38_11, Parcubacteria, Bacteria

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8078..9013
DNA (936bp) protein (312aa)
hypothetical protein
seg (db=Seg db_id=seg from=87 to=102)
hypothetical protein alias=ACD1_C00018G00010,ACD1_1995.36946.85_10,ACD1_1995.36946.85G0010 id=16836 tax=ACD1 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:KKQ51534.1}; TaxID=1618941 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_38_11.;"
ACD1_18_11

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9126..9350
DNA (225bp) protein (75aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
seg (db=Seg db_id=seg from=9 to=23)
SecG (db=HMMPfam db_id=PF03840 from=4 to=67 evalue=5.7e-11 interpro_id=IPR004692 interpro_description=Preprotein translocase SecG subunit GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
ACD1_18_12

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9457..11127
DNA (1671bp) protein (557aa)
family 5 extracellular solute-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=18 to=27)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=51 to=550 evalue=6.3e-107)
ACD1_18_13
GWC2_OD1-i_45_10, Moranbacteria, Parcubacteria, Bacteria

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comp(11454..12374)
DNA (921bp) protein (307aa)
SIS domain (db=superfamily db_id=SSF53697 from=83 to=148 evalue=1.5e-06)
Uncharacterized protein {ECO:0000313|EMBL:KKT88943.1}; TaxID=1618700 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWC2_45_10.;"
ACD1_18_14
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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12492..13901
DNA (1410bp) protein (470aa)
mannose-1-phosphate guanylyltransferase / phosphomannose isomerase (EC:2.7.7.22 5.3.1.8)
mannose-1-phosphate guanylyltransferase / phosphomannose isomerase (EC:2.7.7.22 5.3.1.8)
Mannose-1-phosphate guanylyltransferase / phosphomannose isomerase n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3PDD5_DEFDS (db=UNIREF evalue=5.0e-96 bit_score=355.0 identity=44.97 coverage=97.2340425531915)
seg (db=Seg db_id=seg from=147 to=157)
ACD1_18_15

Not on your lists

13932..14285
DNA (354bp) protein (118aa)
seg (db=Seg db_id=seg from=72 to=83)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=4 to=110 evalue=2.0e-19)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=9 to=114 evalue=1.1e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
no description (db=HMMSmart db_id=SM00418 from=26 to=107 evalue=2.3e-17 interpro_id=IPR001845 interpro_description=HTH transcriptional regulator, ArsR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD1_18_16

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15692..17620
DNA (1929bp) protein (643aa)
metallo-beta-lactamase superfamily protein
metallo-beta-lactamase superfamily protein
Beta-lactamase domain protein n=3 Tax=Chloroflexus RepID=B8G3E7_CHLAD (db=UNIREF evalue=3.0e-111 bit_score=406.0 identity=38.49 coverage=85.6920684292379)
seg (db=Seg db_id=seg from=526 to=541)
ACD1_18_17

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18490..19476
DNA (987bp) protein (329aa)
Tryptophanyl-tRNA synthetase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZC7_RUBXD (db=UNIREF evalue=6.0e-108 bit_score=394.0 identity=54.6 coverage=98.1762917933131)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=12 to=21 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
ACD1_18_18

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19549..19953
DNA (405bp) protein (135aa)
response regulator receiver protein
CheY-like (db=superfamily db_id=SSF52172 from=9 to=133 evalue=1.6e-22 interpro_id=IPR011006 interpro_description=CheY-like)
Response_reg (db=HMMPfam db_id=PF00072 from=15 to=129 evalue=3.2e-18 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00448 from=9 to=128 evalue=1.8e-17 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD1_18_19

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19961..20356
DNA (396bp) protein (132aa)
DNA-binding response regulator
Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B9X1_9FIRM (db=UNIREF evalue=7.0e-16 bit_score=85.9 identity=43.3 coverage=70.4545454545455)
seg (db=Seg db_id=seg from=7 to=26)
CheY-like (db=superfamily db_id=SSF52172 from=4 to=128 evalue=2.4e-27 interpro_id=IPR011006 interpro_description=CheY-like)
ACD1_18_20

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20441..21535
DNA (1095bp) protein (365aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
Purple acid phosphatase, N-terminal domain (db=superfamily db_id=SSF49363 from=267 to=341 evalue=2.4e-05 interpro_id=IPR008963 interpro_description=Purple acid phosphatase-like, N-terminal GO=Molecular Function: acid phosphatase activity (GO:0003993), Molecular Function: metal ion binding (GO:0046872))
Uncharacterized protein {ECO:0000313|EMBL:EKE19195.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD1_18_21
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22275..23612)
DNA (1338bp) protein (446aa)
Phosphomannomutase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N874_9BACT (db=UNIREF evalue=8.0e-117 bit_score=424.0 identity=49.89 coverage=97.3094170403588)
phosphomannomutase (EC:5.4.2.8)
phosphomannomutase (EC:5.4.2.8)
seg (db=Seg db_id=seg from=261 to=270)
ACD1_18_22
GWD2_OD1_38_11, Parcubacteria, Bacteria

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comp(23824..25953)
DNA (2130bp) protein (710aa)
ATP-dependent DNA helicase recG n=1 Tax=Synechocystis sp. PCC 6803 RepID=RECG_SYNY3 (db=UNIREF evalue=2.0e-161 bit_score=573.0 identity=43.76 coverage=93.8028169014084)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
recG: ATP-dependent DNA helicase RecG (db=HMMTigr db_id=TIGR00643 from=25 to=679 evalue=1.1e-253 interpro_id=IPR004609 interpro_description=DNA helicase, ATP-dependent, RecG GO=Molecular Function: ATP-dependent DNA helicase activity (GO:0004003), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
ACD1_18_23
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

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comp(26054..26482)
DNA (429bp) protein (143aa)
26054..26482 - (rbs_motif=None rbs_spacer=None)
ACD1_18_24
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

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27547..37011
DNA (9465bp) protein (3155aa)
RTX toxins and related Ca2+-binding protein
seg (db=Seg db_id=seg from=2897 to=2909)
seg (db=Seg db_id=seg from=3061 to=3076)
seg (db=Seg db_id=seg from=287 to=296)
Displaying 24 items

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