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ACD20_177

Alias: ACD20_46950.4739.19

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_177_1

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3..866
DNA (864bp) protein (288aa)
preprotein translocase subunit SecY
Preprotein translocase, SecY subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUZ2_9BACT (db=UNIREF evalue=2.0e-76 bit_score=289.0 identity=50.69 coverage=98.6111111111111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=239 to=256)
transmembrane_regions (db=TMHMM db_id=tmhmm from=207 to=229)
ACD20_177_2

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955..1173
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=3 to=71 evalue=6.5e-45 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=71 evalue=1.8e-31 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=1 to=71 evalue=4.2e-29 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD20_177_3

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1195..1311
DNA (117bp) protein (39aa)
rpmJ; 50S ribosomal protein L36
RIBOSOMAL_L36 (db=PatternScan db_id=PS00828 from=11 to=37 evalue=0.0 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L36 (db=HMMPfam db_id=PF00444 from=1 to=38 evalue=9.2e-20 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR18804 from=1 to=38 evalue=1.9e-16 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD20_177_4

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1591..1944
DNA (354bp) protein (118aa)
30S ribosomal protein S13 n=3 Tax=Eubacterium siraeum RepID=B0MKN1_9FIRM (db=UNIREF evalue=2.0e-33 bit_score=144.0 identity=57.76 coverage=97.4576271186441)
SSU ribosomal protein S13P
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=89 to=102 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
bact_S13: 30S ribosomal protein S13 (db=HMMTigr db_id=TIGR03631 from=3 to=116 evalue=7.4e-62 interpro_id=IPR019980 interpro_description=Ribosomal protein S13, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD20_177_5

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1976..2377
DNA (402bp) protein (134aa)
30S ribosomal protein S11
seg (db=Seg db_id=seg from=3 to=22)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=101 to=123 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
bact_S11: 30S ribosomal protein S11 (db=HMMTigr db_id=TIGR03632 from=14 to=130 evalue=5.5e-80 interpro_id=IPR019981 interpro_description=Ribosomal protein S11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD20_177_6

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2399..3025
DNA (627bp) protein (209aa)
30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=96 to=120 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=208 evalue=3.6e-80 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=208 evalue=2.0e-63)
ACD20_177_7

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3054..4073
DNA (1020bp) protein (340aa)
DNA-directed RNA polymerase subunit alpha n=1 Tax=bacterium Ellin514 RepID=B9XFK6_9BACT (db=UNIREF evalue=5.0e-96 bit_score=354.0 identity=51.91 coverage=92.0588235294118)
DNA-directed RNA polymerase subunit alpha
DNA-directed RNA polymerase subunit alpha
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=25 to=321 evalue=1.5e-145 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
ACD20_177_8

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4193..4714
DNA (522bp) protein (174aa)
rplQ; 50S ribosomal proein L17
seg (db=Seg db_id=seg from=143 to=172)
seg (db=Seg db_id=seg from=127 to=136)
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=1 to=165 evalue=1.4e-42 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 8 items

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