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ACD21_43

Alias: ACD21_81670.11514.11

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD21_43_1

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489..863
DNA (375bp) protein (125aa)
secE; Preprotein translocase subunit SecE
Protein translocase subunit n=6 Tax=Coxiella burnetii RepID=A9KD45_COXBN (db=UNIREF evalue=1.0e-16 bit_score=88.6 identity=42.0 coverage=79.2)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=61)
ACD21_43_2

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910..1479
DNA (570bp) protein (190aa)
antitermination protein NusG
NUSG (db=PatternScan db_id=PS01014 from=172 to=181 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=17 to=189 evalue=5.5e-85 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00738 from=14 to=123 evalue=1.4e-41 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD21_43_3

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1566..2009
DNA (444bp) protein (148aa)
50S ribosomal protein L11 n=1 Tax=Methylococcus capsulatus RepID=RL11_METCA (db=UNIREF evalue=7.0e-56 bit_score=219.0 identity=75.0 coverage=93.9189189189189)
50S ribosomal protein L11
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=128 to=143 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=4 to=143 evalue=1.1e-89 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD21_43_4

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2002..2577
DNA (576bp) protein (192aa)
50S ribosomal protein L1
50S ribosomal protein L1 n=1 Tax=Thioalkalivibrio sp. K90mix RepID=D3SCU6_THISK (db=UNIREF evalue=1.0e-64 bit_score=249.0 identity=67.82 coverage=90.1041666666667)
seg (db=Seg db_id=seg from=176 to=189)
RIBOSOMAL_L1 (db=PatternScan db_id=PS01199 from=121 to=139 evalue=0.0 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
ACD21_43_5

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2908..3030
DNA (123bp) protein (41aa)
2908..3030 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE00691.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD21_43_6

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3112..3636
DNA (525bp) protein (175aa)
50S ribosomal protein L10
50S ribosomal protein L10 n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4E2_9GAMM (db=UNIREF evalue=4.0e-49 bit_score=196.0 identity=62.79 coverage=97.7142857142857)
seg (db=Seg db_id=seg from=12 to=29)
Ribosomal_L10 (db=HMMPfam db_id=PF00466 from=5 to=100 evalue=2.2e-25 interpro_id=IPR001790 interpro_description=Ribosomal protein L10 GO=Cellular Component: intracellular (GO:0005622), Biological Process: ribosome biogenesis (GO:0042254))
ACD21_43_7

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3674..4048
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 n=3 Tax=Legionella RepID=D3HPJ5_LEGLN (db=UNIREF evalue=7.0e-26 bit_score=119.0 identity=72.58 coverage=98.4)
seg (db=Seg db_id=seg from=104 to=117)
seg (db=Seg db_id=seg from=35 to=54)
ACD21_43_8

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4156..8295
DNA (4140bp) protein (1380aa)
DNA-directed RNA polymerase subunit beta n=6 Tax=Coxiella burnetii RepID=RPOB_COXB2 (db=UNIREF evalue=0.0 bit_score=2018.0 identity=71.84 coverage=99.4927536231884)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
seg (db=Seg db_id=seg from=1083 to=1094)
ACD21_43_9

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comp(8925..9359)
DNA (435bp) protein (145aa)
seg (db=Seg db_id=seg from=110 to=124)
seg (db=Seg db_id=seg from=50 to=61)
Uncharacterized protein {ECO:0000313|EMBL:EKE00695.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD21_43_10

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9803..11551
DNA (1749bp) protein (583aa)
DNA-directed RNA polymerase subunit beta' n=6 Tax=Coxiella burnetii RepID=RPOC_COXBN (db=UNIREF evalue=0.0 bit_score=845.0 identity=69.64 coverage=99.8284734133791)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
seg (db=Seg db_id=seg from=188 to=201)
Displaying 10 items

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