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ACD24_279

Alias: ACD24_20116.5816.18

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD24_279_1
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(3..743)
DNA (741bp) protein (247aa)
UDP-diphosphatase
seg (db=Seg db_id=seg from=45 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=224 to=246)
transmembrane_regions (db=TMHMM db_id=tmhmm from=197 to=219)
ACD24_279_2
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(745..1437)
DNA (693bp) protein (231aa)
seg (db=Seg db_id=seg from=69 to=81)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=11 to=215 evalue=1.6e-27)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=67 to=202 evalue=2.9e-15)
UNCHARACTERIZED (db=HMMPanther db_id=PTHR12176 from=73 to=230 evalue=2.1e-08)
ACD24_279_3

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comp(1471..2751)
DNA (1281bp) protein (427aa)
hypothetical protein
hypothetical protein
Seryl-tRNA synthetase n=1 Tax=Bacillus tusciae DSM 2912 RepID=D5WTU4_9BACL (db=UNIREF evalue=7.0e-98 bit_score=361.0 identity=46.39 coverage=99.2974238875878)
seg (db=Seg db_id=seg from=90 to=103)
ACD24_279_4

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2972..3346
DNA (375bp) protein (125aa)
infA; translation initiation factor IF-1
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=55 to=123 evalue=9.1e-27 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=53 to=123 evalue=1.1e-23 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=53 to=123 evalue=1.5e-20 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD24_279_5

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comp(3463..3696)
DNA (234bp) protein (78aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
seg (db=Seg db_id=seg from=57 to=69)
Uncharacterized protein {ECO:0000313|EMBL:EKD96218.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD24_279_6

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3969..4343
DNA (375bp) protein (125aa)
hypothetical protein
seg (db=Seg db_id=seg from=38 to=53)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=92 to=114 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
Ribosomal protein, S11p/S11a/S14e/organellar S11 types (db=HMMPIR db_id=PIRSF002131 from=1 to=124 evalue=1.2e-65 interpro_id=IPR001971 interpro_description=Ribosomal protein S11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_279_7

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4381..4983
DNA (603bp) protein (201aa)
hypothetical protein
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=96 to=120 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=200 evalue=8.6e-61 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=200 evalue=2.7e-58)
ACD24_279_8

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4998..5855
DNA (858bp) protein (286aa)
DNA-directed RNA polymerase subunit alpha
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=19 to=286 evalue=3.0e-76 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
no description (db=HMMSmart db_id=SM00662 from=19 to=225 evalue=5.0e-55 interpro_id=IPR011263 interpro_description=DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
Insert subdomain of RNA polymerase alpha subunit (db=superfamily db_id=SSF56553 from=49 to=169 evalue=1.4e-41 interpro_id=IPR011262 interpro_description=DNA-directed RNA polymerase, insert domain GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350), Molecular Function: protein dimerization activity (GO:0046983))
Displaying 8 items

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