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ACD45_276

Alias: ACD45_144643.4494.5

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD45_276_1

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3..695
DNA (693bp) protein (231aa)
secY; preprotein translocase subunit SecY
seg (db=Seg db_id=seg from=2 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=181 to=200)
transmembrane_regions (db=TMHMM db_id=tmhmm from=155 to=177)
ACD45_276_2

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930..1286
DNA (357bp) protein (119aa)
small subunit ribosomal protein S13
30S ribosomal protein S13 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXJ3_HALNC (db=UNIREF evalue=2.0e-39 bit_score=164.0 identity=66.37 coverage=94.1176470588235)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
coiled-coil (db=Coil db_id=coil from=47 to=68 evalue=NA)
ACD45_276_3

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1289..1753
DNA (465bp) protein (155aa)
30S ribosomal protein S11
30S ribosomal protein S11 n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=RS11_THISH (db=UNIREF evalue=2.0e-36 bit_score=154.0 identity=61.42 coverage=80.6451612903226)
seg (db=Seg db_id=seg from=86 to=97)
bact_S11: 30S ribosomal protein S11 (db=HMMTigr db_id=TIGR03632 from=34 to=151 evalue=5.2e-72 interpro_id=IPR019981 interpro_description=Ribosomal protein S11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD45_276_4

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1765..2385
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z161_9GAMM (db=UNIREF evalue=3.0e-82 bit_score=307.0 identity=69.9 coverage=99.0338164251208)
rpsD; 30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=94 to=118 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=206 evalue=1.6e-109 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD45_276_5
R_Gammaproteobacteria_42_10, Gammaproteobacteria, Proteobacteria, Bacteria

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2428..3432
DNA (1005bp) protein (335aa)
DNA-directed RNA polymerase subunit alpha n=21 Tax=Pseudomonadaceae RepID=RPOA_PSE14 (db=UNIREF evalue=3.0e-126 bit_score=455.0 identity=69.44 coverage=95.2238805970149)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=23 to=317 evalue=2.7e-140 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
no description (db=HMMSmart db_id=SM00662 from=23 to=233 evalue=3.4e-85 interpro_id=IPR011263 interpro_description=DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
ACD45_276_6
R_Gammaproteobacteria_42_10, Gammaproteobacteria, Proteobacteria, Bacteria

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3419..3787
DNA (369bp) protein (123aa)
50S ribosomal protein L17p
50S ribosomal protein L17 n=2 Tax=Acidithiobacillus ferrooxidans RepID=RL17_ACIF2 (db=UNIREF evalue=6.0e-38 bit_score=159.0 identity=66.39 coverage=98.3739837398374)
RIBOSOMAL_L17 (db=PatternScan db_id=PS01167 from=34 to=56 evalue=0.0 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L17: ribosomal protein L17 (db=HMMTigr db_id=TIGR00059 from=7 to=117 evalue=1.0e-53 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD45_276_7
R_Gammaproteobacteria_42_10, Gammaproteobacteria, Proteobacteria, Bacteria

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3792..4028
DNA (237bp) protein (79aa)
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YF92_9GAMM (db=UNIREF evalue=6.0e-11 bit_score=69.7 identity=53.45 coverage=72.1518987341772)
seg (db=Seg db_id=seg from=60 to=71)
Ribosomal_L21p (db=HMMPfam db_id=PF00829 from=1 to=57 evalue=1.6e-16 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD45_276_8
R_Gammaproteobacteria_42_10, Gammaproteobacteria, Proteobacteria, Bacteria

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4151..4411
DNA (261bp) protein (87aa)
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMT1_ACCPU (db=UNIREF evalue=2.0e-29 bit_score=130.0 identity=73.26 coverage=97.7011494252874)
RIBOSOMAL_L27 (db=PatternScan db_id=PS00831 from=34 to=48 evalue=0.0 interpro_id=IPR018261 interpro_description=Ribosomal protein L27, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L27: ribosomal protein L27 (db=HMMTigr db_id=TIGR00062 from=1 to=83 evalue=5.1e-42 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD45_276_9

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4408..4527
DNA (120bp) protein (40aa)
seg (db=Seg db_id=seg from=32 to=40)
GTP1_OBG (db=HMMPfam db_id=PF01018 from=3 to=40 evalue=6.4e-14 interpro_id=IPR006169 interpro_description=GTP1/OBG subdomain GO=Molecular Function: GTP binding (GO:0005525))
Obg GTP-binding protein N-terminal domain (db=superfamily db_id=SSF82051 from=2 to=40 evalue=3.0e-12 interpro_id=IPR006169 interpro_description=GTP1/OBG subdomain GO=Molecular Function: GTP binding (GO:0005525))
no description (db=Gene3D db_id=G3DSA:2.70.210.12 from=2 to=40 evalue=7.0e-10 interpro_id=IPR006169 interpro_description=GTP1/OBG subdomain GO=Molecular Function: GTP binding (GO:0005525))
Displaying 9 items

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