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ACD5_127

Alias: ACD5_455073.4184.7

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_127_1

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comp(2..70)
DNA (69bp) protein (23aa)
2..70 - (rbs_motif=TAA rbs_spacer=13bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25251.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_127_2

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comp(150..464)
DNA (315bp) protein (105aa)
seg (db=Seg db_id=seg from=12 to=28)
seg (db=Seg db_id=seg from=35 to=49)
Ribosomal_L17 (db=HMMPfam db_id=PF01196 from=3 to=104 evalue=1.0e-25 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413:SF3 from=1 to=104 evalue=3.9e-22)
ACD5_127_3

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comp(605..1570)
DNA (966bp) protein (322aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
seg (db=Seg db_id=seg from=227 to=254)
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=19 to=321 evalue=7.9e-109 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
no description (db=HMMSmart db_id=SM00662 from=19 to=227 evalue=6.8e-72 interpro_id=IPR011263 interpro_description=DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
ACD5_127_4

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comp(1666..2301)
DNA (636bp) protein (212aa)
30S ribosomal protein S4
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=6 to=211 evalue=1.2e-71 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=3 to=211 evalue=3.0e-59)
no description (db=Gene3D db_id=G3DSA:3.10.290.10 from=99 to=211 evalue=4.0e-33)
ACD5_127_5

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comp(2352..2825)
DNA (474bp) protein (158aa)
30S ribosomal protein S11
seg (db=Seg db_id=seg from=34 to=46)
bact_S11: 30S ribosomal protein S11 (db=HMMTigr db_id=TIGR03632 from=38 to=154 evalue=5.6e-61 interpro_id=IPR019981 interpro_description=Ribosomal protein S11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein, S11p/S11a/S14e/organellar S11 types (db=HMMPIR db_id=PIRSF002131 from=32 to=157 evalue=4.1e-58 interpro_id=IPR001971 interpro_description=Ribosomal protein S11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD5_127_6

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comp(2943..3329)
DNA (387bp) protein (129aa)
30S ribosomal protein S13
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=88 to=101 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
bact_S13: 30S ribosomal protein S13 (db=HMMTigr db_id=TIGR03631 from=3 to=115 evalue=4.9e-65 interpro_id=IPR019980 interpro_description=Ribosomal protein S13, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein, S13p/S13a/S18e/organellar S13 types (db=HMMPIR db_id=PIRSF002134 from=1 to=118 evalue=1.5e-49 interpro_id=IPR001892 interpro_description=Ribosomal protein S13 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 6 items

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