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SCN18_25_1_16_R2_B_scaffold_647

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R2_B_scaffold_647_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(552..1490)
DNA (939bp) protein (313aa)
Curli production assembly/transport component CsgG n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VPB1_RHOPX
curli production assembly/transport component CsgG
Curli production assembly/transport component CsgG {ECO:0000313|EMBL:ADU43660.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_25_1_16_R2_B_scaffold_647_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1540..1833)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCW0_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB67681.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_25_1_16_R2_B_scaffold_647_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2229..2750)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QD04_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF02251.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_25_1_16_R2_B_scaffold_647_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2735..3106)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJ33_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE06471.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_647_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3160..4929)
DNA (1770bp) protein (590aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036111F5
curlin associated repeat-containing protein
Curlin associated repeat protein {ECO:0000313|EMBL:ADU43664.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_25_1_16_R2_B_scaffold_647_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6086..6571
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VPB8_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU43667.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_25_1_16_R2_B_scaffold_647_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6552..6950
DNA (399bp) protein (133aa)
Helix-turn-helix domain protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VPB6_RHOPX
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADU43665.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_25_1_16_R2_B_scaffold_647_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6963..7406
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N4L1_RHOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE28767.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCN18_25_1_16_R2_B_scaffold_647_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7416..7760)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003784085
SCN18_25_1_16_R2_B_scaffold_647_10
unknown

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comp(8052..8366)
DNA (315bp) protein (105aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_647_11
unknown

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8378..8590
DNA (213bp) protein (71aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_647_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8782..9396
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VPC3_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU43672.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_25_1_16_R2_B_scaffold_647_13
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9538..9741
DNA (204bp) protein (68aa)
Transposase IS3 n=2 Tax=Ochrobactrum RepID=U4V4Q7_9RHIZ
Insertion element ISR1 uncharacterized 10 kDa protein A3
Transposase IS3 {ECO:0000313|EMBL:ERM00038.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
SCN18_25_1_16_R2_B_scaffold_647_14
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9806..10618
DNA (813bp) protein (271aa)
Insertion sequence IS2A uncharacterized 48.2 kDa protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9ABT1_RHIFH
insertion sequence IS2A uncharacterized 48.2 kDa protein
Insertion sequence IS2A uncharacterized 48.2 kDa protein {ECO:0000313|EMBL:CCE98510.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCN18_25_1_16_R2_B_scaffold_647_15
unknown

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10911..11201
DNA (291bp) protein (97aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_647_16
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11301..11501
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZEZ7_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM92422.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_25_1_16_R2_B_scaffold_647_17
unknown

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comp(11660..11902)
DNA (243bp) protein (81aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_647_18
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13355..13834
DNA (480bp) protein (160aa)
Invasion associated locus B n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZG9_9BRAD
Invasion associated locus B {ECO:0000313|EMBL:EAQ34619.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
invasion associated locus B
SCN18_25_1_16_R2_B_scaffold_647_19
CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, Mobile_element

Not on your lists

14185..15246
DNA (1062bp) protein (354aa)
transposase n=1 Tax=Pseudomonas sp. HYS RepID=UPI000299F575
ISEc14 transposase B {ECO:0000313|EMBL:GAO25238.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
ISEc14 transposase B
SCN18_25_1_16_R2_B_scaffold_647_20
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15376..15606
DNA (231bp) protein (77aa)
transposase IS401 n=1 Tax=Comamonas sp. B-9 RepID=UPI000395696C
ISEc14 transposase A {ECO:0000313|EMBL:GAO25237.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_647_21
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15731..17383)
DNA (1653bp) protein (551aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00037D6087
Uncharacterized protein {ECO:0000313|EMBL:KKC27775.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
GMC oxidoreductase
SCN18_25_1_16_R2_B_scaffold_647_22
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17435..18448)
DNA (1014bp) protein (338aa)
Putative UDP-N-acetylglucosamine 4-epimerase {ECO:0000313|EMBL:CCD95838.1}; EC=5.1.3.7 {ECO:0000313|EMBL:CCD95838.1};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
Putative UDP-N-acetylglucosamine 4-epimerase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SNR1_9BRAD
NAD-dependent epimerase/dehydratase
SCN18_25_1_16_R2_B_scaffold_647_23
unknown

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18909..19277
DNA (369bp) protein (123aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_647_24
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19446..19640
DNA (195bp) protein (65aa)
transposase n=1 Tax=Methylocystis rosea RepID=UPI0003764715
Putative transposase {ECO:0000313|EMBL:KHS41732.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
transposase IS116/IS110/IS902 family protein
Displaying 24 items

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