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SCN18_25_8_15_R4_B_scaffold_117_174

Organism: SCN18_25_8_15_R4_B_Xanthomonadales_70_612

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38
Location: 180021..181883

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000312AE83 similarity UNIREF
DB: UNIREF100
  • Identity: 80.4
  • Coverage: 623.0
  • Bit_score: 973
  • Evalue 7.50e-281
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.7
  • Coverage: 629.0
  • Bit_score: 1008
  • Evalue 2.90e-291
rpoD; RNA polymerase sigma-70 factor, rpod protein similarity KEGG
DB: KEGG
  • Identity: 80.2
  • Coverage: 622.0
  • Bit_score: 970
  • Evalue 1.40e-280

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Taxonomy

SCNpilot_P_inoc_Stenotrophomonas_69_27 → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1863
ATGGCCAACGACCGCCAGACCGCCCCCCAGTCCGACATCAAGTCCCTGATCAGCAAGGGCCTCGAGCAGGGCTACCTGACCTATACCGAGGTCAACGACCACCTGTCCGACGACATGGTCGATCCGGAGCAGCTGGAAGACATCATCGGCATGATCAACGGCATGGGCATCGAGGTCCACGAAGTGGCACCCGATGTCGAGACCCTGCTGCTGGCCGGCCAGCAGACCGGCGGCCGCGAGGTGGACGAAACCGCCGCCGAGGAAGCCGCCGCCGCGCTGACCTCGCTGGACACCGAGGGCGGCCGCACCACCGACCCGGTGCGCATGTACATGCGCGAGATGGGCACCGTGGACCTGTTGACGCGCGAGGGCGAAATTGCGATCGCCAAGCGCATCGAGGAAGGCCTGGCGCAGATGAACGCCGCGCTGGCCAGCTTCCCGCCCACGATCCGCCAGCTGCTGGAGGACTACGAGCTGCACAAGGCCGGCAAGAAGCGCCTGGCCGAGATCGTGGTCGGCTTCAACGACGAGGAGCCGGAGCCGGAGGAGCTGCCGGTGGCGGAAATCGACGAGTCCGCAGACGCCGAGGCCGAGGACGACGAGGATGCCGACGACACCGGCGGCGAGGCCGACGAGCCGGCACCGACCGGGCCGGACCCGGCCGAGGTGGCGGCGCGTATGGAGGCCCTGGCCGCCGCGTTCGCGCGCTTCGAGAAGGCCTGGGCCAAGGGCGGCCCGGCCGGCAAGGCGGCCCTGAAGGCGCGCGAGGAGATGGCGGCCACTTTCGTCACCCTGAAGCTGCCGCTGCCGCTGACCGACGCGCTGGTGAAGAACCTGCGTGAGGCAGTCAACGCCGCCAAGGAGCACGAGCGCCGCATCCTCGACCTGTGCACCCGGGTCGCGAAGATGCCGCGCAAGGATTTCCTCAAGGCCTGGGAAGGCAACCAGACCAACCTCGAATGGGTGGACGAGCTGCTCAAGCGCAAGCAGAAGTGGGGCAGCGCCCTGCGCGAGGTGAAGGACCAGATCCTCGCCGAACAGCAGGCCACCCTCGCGCTGGAAAAGACCATGCGCATCAGCCTGCCGGACCTGAAGGACATCAACCGCGCGCTCTCCTACGGCGAGGCCAAGGCGCGCAAGGCCAAGAAGGAGATGGTCGAGGCCAACCTGCGCCTGGTCATCTCGATCGCCAAGAAATACACCAACCGCGGCCTGCAGTTCCTCGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAGCACCGCCGCGGCTTCAAGTTCTCGACCTACGCGACGTGGTGGATCCGCCAGGCCATCACCCGCTCGATCGCCGACCAGGCGCGCACCATCCGCATCCCGGTGCACATGATCGAGACCATCAACAAGCTCAACCGCATTTCCCGCCAGATGCTCCAGCAGTACGGCCGCGAGGCCACGCCGGAAGAGCTGGCGAAGGAAATGGACATGCCCGAGGACAAGATCCGCAAGGTGATGAAAATCGCCAAGGAGCCGATCTCGATGGAGACCCCGATCGGCGACGACGAGGACTCCCATCTCGGCGACTTCATCGAGGACACCAACGCGATGTCCCCGATGGACGCGACCACCGACATCAACCTGATCGAGACCGTCCGCAACGTGCTGGCCGGACTGACCCCGCGCGAGGCCAAGGTGCTGCGCATGCGCTTCGGCATCGACATGAACACTGACCACACCCTGGAAGAGGTCGGCAAGCAGTTTGACGTCACCCGCGAACGCATCCGCCAGATCGAGGCCAAGGCCCTGCGCAAACTGCGCCACCCCAGCCGCTCGGAGATGCTGCGCAGCTTCCTCGACATCGACTGA
PROTEIN sequence
Length: 621
MANDRQTAPQSDIKSLISKGLEQGYLTYTEVNDHLSDDMVDPEQLEDIIGMINGMGIEVHEVAPDVETLLLAGQQTGGREVDETAAEEAAAALTSLDTEGGRTTDPVRMYMREMGTVDLLTREGEIAIAKRIEEGLAQMNAALASFPPTIRQLLEDYELHKAGKKRLAEIVVGFNDEEPEPEELPVAEIDESADAEAEDDEDADDTGGEADEPAPTGPDPAEVAARMEALAAAFARFEKAWAKGGPAGKAALKAREEMAATFVTLKLPLPLTDALVKNLREAVNAAKEHERRILDLCTRVAKMPRKDFLKAWEGNQTNLEWVDELLKRKQKWGSALREVKDQILAEQQATLALEKTMRISLPDLKDINRALSYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEHRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNAMSPMDATTDINLIETVRNVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEMLRSFLDID*