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SCN18_25_8_15_R4_B_scaffold_1719

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_1719_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..878)
DNA (876bp) protein (292aa)
heme lyase subunit CcmF n=1 Tax=Methylocystis parvus RepID=UPI0002EB090F
cytochrome c-type biogenesis protein CcmF
Cytochrome c-type biogenesis protein cycK {ECO:0000313|EMBL:CCG42512.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
SCN18_25_8_15_R4_B_scaffold_1719_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(875..1324)
DNA (450bp) protein (150aa)
cytochrome C n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B7535C
ccmE; CcmE/CycJ protein
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
SCN18_25_8_15_R4_B_scaffold_1719_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1442..1786)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NWQ7_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KJB96025.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_1719_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1994..3190
DNA (1197bp) protein (399aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRM5_PARL1
Uncharacterized protein {ECO:0000313|EMBL:KKO11504.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCN18_25_8_15_R4_B_scaffold_1719_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3209..4597)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRM3_PARL1
Uncharacterized protein {ECO:0000313|EMBL:CDO60689.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_1719_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4657..5991)
DNA (1335bp) protein (445aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRL9_PARL1
integral membrane sensor signal transduction histidine kinase
SCN18_25_8_15_R4_B_scaffold_1719_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6032..6910)
DNA (879bp) protein (293aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRL8_PARL1
Two-component system response regulator QseB {ECO:0000313|EMBL:CDO60685.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
two component transcriptional regulator
SCN18_25_8_15_R4_B_scaffold_1719_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7007..7507)
DNA (501bp) protein (167aa)
SCN18_25_8_15_R4_B_scaffold_1719_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7548..8549
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ3 RepID=UPI0003828E03
Uncharacterized protein {ECO:0000313|EMBL:EAP90887.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_1719_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8546..8884)
DNA (339bp) protein (113aa)
Nitroreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRL6_PARL1
nitroreductase
Nitroreductase {ECO:0000313|EMBL:ABS62549.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 10 items

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