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SCN18_25_8_15_R4_B_scaffold_935

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_935_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1884)
DNA (1884bp) protein (628aa)
hypothetical protein n=1 Tax=Catenovulum agarivorans RepID=UPI00030E8F48
Uncharacterized protein {ECO:0000313|EMBL:KCZ49487.1}; TaxID=1280941 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. T16B2.;"
oligoendopeptidase F
SCN18_25_8_15_R4_B_scaffold_935_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2073..2600
DNA (528bp) protein (176aa)
thiol-disulfide isomerase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD499
thiol-disulfide isomerase
Thiol-disulfide isomerase {ECO:0000313|EMBL:AAV90543.2}; Flags: Precursor;; TaxID=264203 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4).;"
SCN18_25_8_15_R4_B_scaffold_935_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2623..3330)
DNA (708bp) protein (236aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YK65_9RHIZ
methionine sulfoxide reductase A
SCN18_25_8_15_R4_B_scaffold_935_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3323..3871)
DNA (549bp) protein (183aa)
methionine-R-sulfoxide reductase (EC:1.8.4.12)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400, ECO:0000313|EMBL:CCJ07875.1};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
methionine sulfoxide reductase n=1 Tax=Methylocystis rosea RepID=UPI00036C3E60
SCN18_25_8_15_R4_B_scaffold_935_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4046..4981)
DNA (936bp) protein (312aa)
Geranyltranstransferase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TJ66_TISMK
Farnesyl-diphosphate synthase {ECO:0000313|EMBL:KGM31584.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ispA; geranyltranstransferase
SCN18_25_8_15_R4_B_scaffold_935_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5060..6136
DNA (1077bp) protein (359aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Burkholderia sp. TJI49 RepID=F0G1H1_9BURK
SCN18_25_8_15_R4_B_scaffold_935_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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6167..7315
DNA (1149bp) protein (383aa)
Hopanoid biosynthesis associated radical SAM protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EIP9_9BURK
Hopanoid biosynthesis associated radical SAM protein {ECO:0000313|EMBL:EKZ99235.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
hpnH; hopanoid biosynthesis associated radical SAM protein
SCN18_25_8_15_R4_B_scaffold_935_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7259..7924)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003749DE7
Hopanoid-associated phosphorylase {ECO:0000313|EMBL:EHM03395.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_935_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8103..8492)
DNA (390bp) protein (130aa)
cysteine transferase n=1 Tax=Methylobacter marinus RepID=UPI00036DBCD7
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:KJK33155.1}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCN18_25_8_15_R4_B_scaffold_935_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8523..10472)
DNA (1950bp) protein (650aa)
Squalene-hopene cyclase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUF2_9PROT
Squalene-hopene cyclase {ECO:0000313|EMBL:EHM03396.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
squalene-hopene cyclase
SCN18_25_8_15_R4_B_scaffold_935_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10504..11760)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCB24
squalene-associated FAD-dependent desaturase
Squalene-associated FAD-dependent desaturase {ECO:0000313|EMBL:EHM03397.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCN18_25_8_15_R4_B_scaffold_935_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11757..12623)
DNA (867bp) protein (289aa)
phytoene synthase (EC:2.5.1.-)
phytoene synthase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288C40F
Squalene synthase HpnD {ECO:0000313|EMBL:EHM03398.1}; Flags: Fragment;; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCN18_25_8_15_R4_B_scaffold_935_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12620..13501)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003726BE2
squalene synthase HpnC
Squalene synthase HpnC {ECO:0000313|EMBL:AGH49564.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_25_8_15_R4_B_scaffold_935_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13498..14652)
DNA (1155bp) protein (385aa)
Hopene-associated glycosyltransferase HpnB n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A2F3_9PROT
Hopene-associated glycosyltransferase HpnB {ECO:0000313|EMBL:EHL99651.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
HpnB protein
SCN18_25_8_15_R4_B_scaffold_935_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14649..15641)
DNA (993bp) protein (331aa)
Hopanoid-associated sugar epimerase n=1 Tax=Burkholderia graminis C4D1M RepID=B1FUK1_9BURK
Hopanoid-associated sugar epimerase {ECO:0000313|EMBL:EDT12311.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
dihydroflavonol-4-reductase
SCN18_25_8_15_R4_B_scaffold_935_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15647..16600)
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0P7_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH49570.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_25_8_15_R4_B_scaffold_935_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16628..17527)
DNA (900bp) protein (300aa)
hopanoid biosynthesis associated protein HpnK n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B790ED
Cellobiose phosphotransferase system celC {ECO:0000313|EMBL:GAO55488.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated protein HpnK
SCN18_25_8_15_R4_B_scaffold_935_18
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17524..18954)
DNA (1431bp) protein (477aa)
Hopanoid biosynthesis associated radical SAM protein HpnJ n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y030_9PROT
Hopanoid biosynthesis associated radical SAM protein HpnJ {ECO:0000313|EMBL:EGY01126.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hopanoid biosynthesis associated radical SAM protein HpnJ
SCN18_25_8_15_R4_B_scaffold_935_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18964..20103)
DNA (1140bp) protein (380aa)
Hopanoid biosynthesis associated glycosyl transferase protein HpnI n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y3F1_9RHIZ
Hopanoid biosynthesis associated glycosyl transferase protein HpnI {ECO:0000313|EMBL:EMS41416.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
hopanoid biosynthesis associated glycosyl transferase protein HpnI
SCN18_25_8_15_R4_B_scaffold_935_trna_1
unknown

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comp(20236..20307)
DNA (72bp)
transferRNA Gly
SCN18_25_8_15_R4_B_scaffold_935_20
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20411..20506)
DNA (96bp) protein (32aa)
Displaying 21 items

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