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SCNpilot_cont_1000_bf_scaffold_4416

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_4416_1
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..593
DNA (591bp) protein (197aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
mfd; transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
transcription-repair coupling factor n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003814830
SCNpilot_cont_1000_bf_scaffold_4416_2
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(701..1603)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000371953A
Uncharacterized protein {ECO:0000313|EMBL:GAD33710.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_4416_3
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1871..2470
DNA (600bp) protein (200aa)
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase {ECO:0000313|EMBL:KJL21573.1}; EC=2.3.1.191 {ECO:0000313|EMBL:KJL21573.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
transferase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036D11AF rbh
carbonic anhydrase/acetyltransferase, isoleucine patch superfamily
SCNpilot_cont_1000_bf_scaffold_4416_4
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2470..3036
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B649A4
Uncharacterized protein {ECO:0000313|EMBL:KJQ53380.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
SCNpilot_cont_1000_bf_scaffold_4416_5
unknown

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comp(3053..3214)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_4416_6
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3288..4688)
DNA (1401bp) protein (467aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.1.1.31 {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
ppc; phosphoenolpyruvate carboxylase; K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
phosphoenolpyruvate carboxylase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000381D959
SCNpilot_cont_1000_bf_scaffold_4416_7
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4733..5782)
DNA (1050bp) protein (350aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.1.1.31 {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
ppc; phosphoenolpyruvate carboxylase; K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
phosphoenolpyruvate carboxylase n=1 Tax=Microbacterium yannicii RepID=UPI000315BB3A
SCNpilot_cont_1000_bf_scaffold_4416_8
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5923..7071
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000370D098 rbh
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
ABC-type transporter, permease rbh
SCNpilot_cont_1000_bf_scaffold_4416_9
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7084..7800
DNA (717bp) protein (239aa)
pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] rbh
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002E34CD4 rbh
Nucleoside triphosphate hydrolase {ECO:0000313|EMBL:KEP74973.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_cont_1000_bf_scaffold_4416_10
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7843..9141
DNA (1299bp) protein (433aa)
histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
histidyl-tRNA synthetase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036CF5BC rbh
Histidyl-tRNA synthetase {ECO:0000313|EMBL:KHK98991.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
SCNpilot_cont_1000_bf_scaffold_4416_11
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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9209..10333
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00031B8DEA
GDSL-like Lipase/Acylhydrolase {ECO:0000313|EMBL:KJL35018.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
GDSL family lipase
SCNpilot_cont_1000_bf_scaffold_4416_12
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10366..11064
DNA (699bp) protein (233aa)
O-methyltransferase; K00599 [EC:2.1.1.-] rbh
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003774E10 rbh
Methyltransferase {ECO:0000313|EMBL:KHK98482.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
SCNpilot_cont_1000_bf_scaffold_4416_13
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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11136..11828
DNA (693bp) protein (231aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
eno; enolase; K01689 enolase [EC:4.2.1.11]
Enolase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XHP0_9MICO
Displaying 13 items

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