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SCNPILOT_EXPT_300_BF_Nitrosospira_56_20

SCNPILOT_CONT_1000_BF_Nitrosospira_56_92
In projects: SCNPILOT_CONT_1000_BF

Consensus taxonomy: Nitrosospira  →  Nitrosomonadales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 274 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_bf_scaffold_31338
Species: Taylorella asinigenitalis (100%)
1 2668 bp 52.44 81.71 4.95
SCNpilot_cont_1000_bf_scaffold_30889 1 1514 bp 52.91 80.91 26.16
SCNpilot_cont_1000_bf_scaffold_26997
Genus: Nitrosospira (66.67%)
3 1674 bp 49.10 28.82 26.70
SCNpilot_cont_1000_bf_scaffold_30816 3 1516 bp 45.25 38.75 41.75
SCNpilot_cont_1000_bf_scaffold_39234
Species: Nitrosospira lacus (50%)
2 1263 bp 50.99 89.67 50.12
SCNpilot_cont_1000_bf_scaffold_40402 4 2328 bp 53.44 67.44 51.29
SCNpilot_cont_1000_bf_scaffold_33851
Genus: Sulfuricella (66.67%)
3 1413 bp 50.46 44.23 56.05
SCNpilot_cont_1000_bf_scaffold_4697
Genus: Nitrosospira (80%)
5 5251 bp 52.77 111.69 56.45
SCNpilot_cont_1000_bf_scaffold_38254
Species: Nitrosospira multiformis (50%)
2 1288 bp 58.15 37.46 56.60
SCNpilot_cont_1000_bf_scaffold_13456 4 2758 bp 53.59 91.01 57.00
SCNpilot_cont_1000_bf_scaffold_7523
Phylum: Proteobacteria (62.5%)
8 3987 bp 50.19 35.11 58.09
SCNpilot_cont_1000_bf_scaffold_38328
Species: Nitrosospira sp. NpAV (100%)
2 1286 bp 51.48 90.40 58.79
SCNpilot_cont_1000_bf_scaffold_47100
Species: Nitrosospira lacus (50%)
2 1084 bp 57.84 33.90 58.95
SCNpilot_cont_1000_bf_scaffold_28038
Species: Nitrosospira sp. NpAV (50%)
4 3539 bp 57.81 100.31 59.68
SCNpilot_cont_1000_bf_scaffold_25660 6 2787 bp 46.93 59.02 60.71
SCNpilot_cont_1000_bf_scaffold_36467
Species: Nitrosospira sp. NpAV (50%)
6 3460 bp 53.06 86.56 60.95
SCNpilot_cont_1000_bf_scaffold_41105 3 1219 bp 52.67 107.05 61.28
SCNpilot_cont_1000_bf_scaffold_20972
Species: Solitalea canadensis (50%)
2 2023 bp 53.14 38.56 61.99
SCNpilot_cont_1000_bf_scaffold_3334
Phylum: Proteobacteria (71.43%)
7 6394 bp 51.06 31.98 63.76
SCNpilot_cont_1000_bf_scaffold_36805
Genus: Nitrosomonas (66.67%)
3 1326 bp 51.81 32.05 64.03
SCNpilot_cont_1000_bf_scaffold_13361
Phylum: Proteobacteria (71.43%)
7 3701 bp 51.93 92.81 64.12
SCNpilot_cont_1000_bf_scaffold_26718
Species: Nitrosospira lacus (50%)
2 1686 bp 53.68 85.41 64.41
SCNpilot_cont_1000_bf_scaffold_7723
Species: Nitrosospira sp. NpAV (50%)
6 6451 bp 55.15 109.60 65.48
SCNpilot_cont_1000_bf_scaffold_8403
Species: Nitrosospira sp. NpAV (66.67%)
6 4620 bp 52.94 101.19 65.91
SCNpilot_cont_1000_bf_scaffold_2844
Species: Nitrosospira sp. NpAV (62.5%)
8 7020 bp 52.69 101.28 67.14
SCNpilot_cont_1000_bf_scaffold_24259
Species: Thiorhodococcus drewsii (50%)
2 1815 bp 53.88 24.52 67.44
SCNpilot_cont_1000_bf_scaffold_20954
Species: Nitrosospira sp. NpAV (50%)
2 2024 bp 53.80 120.43 67.74
SCNpilot_cont_1000_bf_scaffold_27149
Species: marine sediment metagenome (50%)
2 1667 bp 53.03 83.98 68.39
SCNpilot_cont_1000_bf_scaffold_4195
Genus: Nitrosospira (80%)
5 6594 bp 54.34 104.03 68.56
SCNpilot_cont_1000_bf_scaffold_13554
Phylum: Proteobacteria (80%)
5 5188 bp 52.93 95.17 68.87
SCNpilot_cont_1000_bf_scaffold_5526
Domain: Bacteria (85.71%)
7 4785 bp 50.74 32.55 69.59
SCNpilot_cont_1000_bf_scaffold_6427
Class: Betaproteobacteria (60%)
5 4402 bp 48.36 23.40 70.20
SCNpilot_cont_1000_bf_scaffold_31723
Species: Nitrosospira lacus (50%)
2 1485 bp 56.30 34.01 71.31
SCNpilot_cont_1000_bf_scaffold_15793
Species: Nitrosospira sp. NpAV (50%)
4 4444 bp 52.41 103.34 71.76
SCNpilot_cont_1000_bf_scaffold_11981
Class: Gammaproteobacteria (60%)
5 2976 bp 49.80 37.05 72.48
SCNpilot_cont_1000_bf_scaffold_47166
Species: Nitrosospira lacus (100%)
2 1083 bp 51.89 112.42 72.85
SCNpilot_cont_1000_bf_scaffold_27861
Species: Nitrosospira multiformis (50%)
2 2800 bp 55.04 48.84 73.61
SCNpilot_cont_1000_bf_scaffold_6746
Class: Betaproteobacteria (57.14%)
7 7907 bp 49.44 41.01 73.87
SCNpilot_cont_1000_bf_scaffold_17738
Species: Nitrosospira sp. NpAV (50%)
2 2282 bp 58.72 82.06 74.01
SCNpilot_cont_1000_bf_scaffold_4826
Genus: Nitrosospira (54.55%)
11 7915 bp 54.66 100.41 74.48
SCNpilot_cont_1000_bf_scaffold_50604
Species: Nitrosospira sp. NpAV (50%)
2 1011 bp 58.95 108.80 74.48
SCNpilot_cont_1000_bf_scaffold_30313
Species: R_Burkholderiales_57_36 (50%)
2 1536 bp 50.52 30.11 74.61
SCNpilot_cont_1000_bf_scaffold_6914
Genus: Nitrosospira (50%)
4 5470 bp 58.94 116.27 75.03
SCNpilot_cont_1000_bf_scaffold_5830
Species: Nitrosospira sp. NpAV (50%)
6 4647 bp 55.13 101.25 75.60
SCNpilot_cont_1000_bf_scaffold_29675
Genus: Nitrosospira (66.67%)
3 1561 bp 56.76 106.34 75.91
SCNpilot_cont_1000_bf_scaffold_3172
Phylum: Proteobacteria (71.43%)
7 6580 bp 46.06 55.40 77.19
SCNpilot_cont_1000_bf_scaffold_6596
Species: Nitrosospira sp. NpAV (71.43%)
7 4333 bp 52.23 34.44 77.20
SCNpilot_cont_1000_bf_scaffold_12006
Genus: Nitrosospira (66.67%)
9 6077 bp 55.08 96.63 77.31
SCNpilot_cont_1000_bf_scaffold_11999
Species: Nitrosospira lacus (66.67%)
6 5687 bp 54.28 112.23 77.33
SCNpilot_cont_1000_bf_scaffold_3845
Genus: Nitrosospira (68.75%)
16 13832 bp 55.51 104.56 77.69
Displaying items 1-50 of 274 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.