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SCNPILOT_EXPT_300_BF_Nitrosospira_56_20

SCNPILOT_CONT_1000_BF_Nitrosospira_56_92
In projects: SCNPILOT_CONT_1000_BF

Consensus taxonomy: Nitrosospira  →  Nitrosomonadales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 151-200 of 274 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_bf_scaffold_791
Genus: Nitrosospira (86.11%)
36 34288 bp 56.61 104.71 87.73
SCNpilot_cont_1000_bf_scaffold_4793
Genus: Nitrosospira (88.89%)
9 13677 bp 55.36 107.55 87.74
SCNpilot_cont_1000_bf_scaffold_457
Genus: Nitrosospira (89.23%)
130 146043 bp 54.59 97.03 87.80
SCNpilot_cont_1000_bf_scaffold_7720
Phylum: Proteobacteria (80%)
5 3926 bp 39.17 97.87 87.80
SCNpilot_cont_1000_bf_scaffold_505
Species: Nitrosospira sp. NpAV (56.1%)
41 42032 bp 55.08 98.27 87.85
SCNpilot_cont_1000_bf_scaffold_860
Genus: Nitrosospira (87.1%)
31 30069 bp 58.00 112.12 88.03
SCNpilot_cont_1000_bf_scaffold_41813
Species: Nitrosospira lacus (100%)
2 1203 bp 52.62 129.47 88.03
SCNpilot_cont_1000_bf_scaffold_14673
Species: Nitrosospira lacus (50%)
4 3615 bp 50.43 58.78 88.05
SCNpilot_cont_1000_bf_scaffold_15290
Genus: Nitrosospira (66.67%)
3 2527 bp 51.72 90.82 88.09
SCNpilot_cont_1000_bf_scaffold_692
Genus: Nitrosospira (85.71%)
21 31125 bp 56.47 104.42 88.27
SCNpilot_cont_1000_bf_scaffold_9140
Species: Nitrosospira lacus (66.67%)
6 3533 bp 55.11 97.16 88.31
SCNpilot_cont_1000_bf_scaffold_840
Genus: Nitrosospira (85.23%)
88 107048 bp 54.79 87.91 88.39
SCNpilot_cont_1000_bf_scaffold_43785
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
2 1157 bp 49.87 31.11 88.42
SCNpilot_cont_1000_bf_scaffold_900
Species: Nitrosospira sp. NpAV (50%)
24 20998 bp 57.01 110.97 88.63
SCNpilot_cont_1000_bf_scaffold_732
Genus: Nitrosospira (90.91%)
22 31847 bp 55.98 104.33 88.63
SCNpilot_cont_1000_bf_scaffold_37180
Species: Nitrosospira sp. NpAV (100%)
1 1316 bp 61.47 115.69 88.91
SCNpilot_cont_1000_bf_scaffold_4538
Species: Nitrosospira lacus (50%)
4 5365 bp 52.54 64.77 88.91
SCNpilot_cont_1000_bf_scaffold_3596
Genus: Nitrosospira (59.09%)
22 18925 bp 56.13 96.25 88.96
SCNpilot_cont_1000_bf_scaffold_7699
Class: Betaproteobacteria (50%)
10 6360 bp 49.56 64.54 88.96
SCNpilot_cont_1000_bf_scaffold_1030
Genus: Nitrosospira (80%)
15 17745 bp 55.00 99.87 88.97
SCNpilot_cont_1000_bf_scaffold_26125
Class: Betaproteobacteria (66.67%)
3 2891 bp 58.46 117.09 89.24
SCNpilot_cont_1000_bf_scaffold_11503
Species: Nitrosospira lacus (50%)
4 3055 bp 54.66 99.10 89.26
SCNpilot_cont_1000_bf_scaffold_1724
Genus: Nitrosospira (93.33%)
15 13761 bp 56.06 109.78 89.27
SCNpilot_cont_1000_bf_scaffold_1114
Genus: Nitrosospira (79.17%)
24 22709 bp 56.09 95.28 89.30
SCNpilot_cont_1000_bf_scaffold_2251
Species: Nitrosospira sp. NpAV (80%)
10 17214 bp 57.74 106.43 89.30
SCNpilot_cont_1000_bf_scaffold_1120
Genus: Nitrosospira (66.67%)
15 17744 bp 57.67 111.64 89.32
SCNpilot_cont_1000_bf_scaffold_760
Genus: Nitrosospira (87.23%)
47 51580 bp 56.39 104.34 89.42
SCNpilot_cont_1000_bf_scaffold_3275
Genus: Nitrosospira (80%)
5 6474 bp 58.12 114.15 89.48
SCNpilot_cont_1000_bf_scaffold_517
Genus: Nitrosospira (87.67%)
73 79702 bp 55.89 102.03 89.50
SCNpilot_cont_1000_bf_scaffold_9821
Species: Nitrosospira sp. NpAV (83.33%)
6 6928 bp 59.82 111.90 89.55
SCNpilot_cont_1000_bf_scaffold_768
Species: Nitrosospira sp. NpAV (50%)
28 31535 bp 55.74 106.55 89.61
SCNpilot_cont_1000_bf_scaffold_357
Class: Betaproteobacteria (73.68%)
152 137178 bp 60.84 89.26 89.65
SCNpilot_cont_1000_bf_scaffold_1321
Species: Nitrosospira sp. NpAV (50%)
10 11880 bp 56.82 111.05 89.66
SCNpilot_cont_1000_bf_scaffold_1059
Class: Betaproteobacteria (53.85%)
13 14588 bp 49.60 28.21 89.81
SCNpilot_cont_1000_bf_scaffold_9574
Genus: Nitrosospira (100%)
3 3437 bp 61.36 114.78 89.82
SCNpilot_cont_1000_bf_scaffold_494
Phylum: Proteobacteria (59.21%)
76 62742 bp 54.64 49.88 90.03
SCNpilot_cont_1000_bf_scaffold_1047
Genus: Nitrosospira (53.33%)
15 14812 bp 53.36 29.32 90.19
SCNpilot_cont_1000_bf_scaffold_1430
Genus: Nitrosospira (100%)
10 11047 bp 54.15 98.94 90.27
SCNpilot_cont_1000_bf_scaffold_16830
Species: Nitrosospira lacus (100%)
1 2365 bp 56.11 42.39 90.32
SCNpilot_cont_1000_bf_scaffold_11146
Species: Nitrosospira sp. NpAV (66.67%)
3 4729 bp 56.33 98.28 90.34
SCNpilot_cont_1000_bf_scaffold_1019
Genus: Nitrosospira (96.88%)
32 17538 bp 52.90 96.08 90.56
SCNpilot_cont_1000_bf_scaffold_533
Genus: Nitrosospira (88.14%)
59 58166 bp 55.76 104.39 90.65
SCNpilot_cont_1000_bf_scaffold_1129
Genus: Nitrosospira (88.89%)
18 18590 bp 57.33 109.08 90.76
SCNpilot_cont_1000_bf_scaffold_29575
Species: Nitrosospira sp. NpAV (100%)
1 1564 bp 59.14 114.45 90.92
SCNpilot_cont_1000_bf_scaffold_7295
Species: Nitrosospira lacus (75%)
4 4067 bp 64.08 211.95 90.95
SCNpilot_cont_1000_bf_scaffold_4588
Species: Nitrosospira lacus (50%)
4 5335 bp 51.47 29.71 90.98
SCNpilot_cont_1000_bf_scaffold_1669
Genus: Nitrosospira (80%)
15 15440 bp 55.75 107.58 91.09
SCNpilot_cont_1000_bf_scaffold_1347
Species: Nitrosospira sp. NpAV (51.85%)
27 33734 bp 56.39 103.97 91.10
SCNpilot_cont_1000_bf_scaffold_2044
Species: Nitrosospira sp. NpAV (57.45%)
47 46221 bp 58.07 119.34 91.18
SCNpilot_cont_1000_bf_scaffold_1345
Phylum: Proteobacteria (75%)
8 11674 bp 54.70 71.23 91.23
Displaying items 151-200 of 274 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.