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SCNpilot_cont_1000_p_scaffold_2210

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2210_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..686)
DNA (684bp) protein (228aa)
Uracil-DNA glycosylase, family 5 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTG3_9PROT rbh
SPO1 DNA polymerase {ECO:0000313|EMBL:KIO49138.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein rbh
SCNpilot_cont_1000_p_scaffold_2210_2
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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751..1317
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=EFP_NITMU rbh
translation elongation factor P; K02356 elongation factor P rbh
Elongation factor P {ECO:0000255|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000255|HAMAP-Rule:MF_00141};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_2210_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1366..2688)
DNA (1323bp) protein (441aa)
Phosphate-selective porin O and P n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9K1_NITMU rbh
Porin {ECO:0000313|EMBL:KIO49223.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phosphate-selective porin O and P; K07221 phosphate-selective porin OprO and OprP rbh
SCNpilot_cont_1000_p_scaffold_2210_4
unknown

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3513..3887
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2210_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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4030..4755
DNA (726bp) protein (242aa)
Kazal-type serine protease inhibitor domain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLD1_9PROT
Kazal-type serine protease inhibitor domain {ECO:0000313|EMBL:CCU63473.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
proteinase inhibitor I1, Kazal
SCNpilot_cont_1000_p_scaffold_2210_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4773..5216)
DNA (444bp) protein (148aa)
Response regulator receiver protein n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0T5V3_METSL
Chemotaxis protein CheY {ECO:0000313|EMBL:KIO49142.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
response regulator receiver protein
SCNpilot_cont_1000_p_scaffold_2210_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5257..6660)
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Putative two-component histidine kinase sensor protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G3M4_HERAR rbh
two-component histidine kinase sensor protein rbh
SCNpilot_cont_1000_p_scaffold_2210_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7077..7979)
DNA (903bp) protein (301aa)
Putative membrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF30_9PROT rbh
Membrane protein {ECO:0000313|EMBL:KIO47861.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter rbh
SCNpilot_cont_1000_p_scaffold_2210_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8169..8981
DNA (813bp) protein (271aa)
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003778817 rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:KIO48397.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator rbh
SCNpilot_cont_1000_p_scaffold_2210_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9021..10778
DNA (1758bp) protein (586aa)
frdA; putative reductase (alkanesulfonate metabolism) (EC:1.3.99.1) rbh
Putative reductase (Alkanesulfonate metabolism) n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AH84_COLFT rbh
Oxidoreductase {ECO:0000313|EMBL:KIO48396.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2210_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10801..11034
DNA (234bp) protein (78aa)
4Fe-4S ferredoxin n=1 Tax=Variovorax paradoxus RepID=UPI000372E74A
4Fe-4S ferredoxin {ECO:0000313|EMBL:KIO48395.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ferredoxin
SCNpilot_cont_1000_p_scaffold_2210_12
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11077..12510
DNA (1434bp) protein (478aa)
nitrate ABC transporter substrate-binding protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0003145663
nitrate ABC transporter periplasmic nitrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
Nitrate ABC transporter, periplasmic nitrate-binding protein, putative {ECO:0000313|EMBL:AEK62492.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_cont_1000_p_scaffold_2210_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12562..13395
DNA (834bp) protein (278aa)
ABC transporter permease n=1 Tax=Herbaspirillum lusitanum RepID=UPI000382C7BC
ABC transporter permease {ECO:0000313|EMBL:KIO48529.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_1000_p_scaffold_2210_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13392..14261
DNA (870bp) protein (290aa)
ssuB; putative sulfate ABC transporter ATPase (EC:3.6.3.36); K02049 NitT/TauT family transport system ATP-binding protein rbh
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000368031E rbh
Sulfonate ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIO48394.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2210_15
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14263..15261
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003805709 rbh
Uncharacterized protein {ECO:0000313|EMBL:ELX12851.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
HEAT repeat protein rbh
SCNpilot_cont_1000_p_scaffold_2210_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15308..15604
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002D6260B
Uncharacterized protein {ECO:0000313|EMBL:KIO48393.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_2210_17
unknown

Not on your lists

comp(15476..15733)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2210_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15912..16763
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPL1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48528.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
Displaying 18 items

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