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SCNpilot_cont_1000_p_scaffold_2427

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_2427_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1..726
DNA (726bp) protein (242aa)
Glutamine amidotransferase class-I n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA73_NITMU rbh
Glutamine amidotransferase {ECO:0000313|EMBL:KIO49825.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
glutamine amidotransferase class-I rbh
SCNpilot_cont_1000_p_scaffold_2427_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(834..1319)
DNA (486bp) protein (162aa)
UPF0234 protein EBAPG3_13420 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI78_9PROT
UPF0234 protein EBAPG3_13420 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative nucleotide-binding protein; K09767 hypothetical protein
SCNpilot_cont_1000_p_scaffold_2427_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1384..2634)
DNA (1251bp) protein (417aa)
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] rbh
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Argininosuccinate synthase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=ASSY_NITMU rbh
SCNpilot_cont_1000_p_scaffold_2427_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2671..3627)
DNA (957bp) protein (319aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ornithine carbamoyltransferase (EC:2.1.3.3) rbh
Ornithine carbamoyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIC0_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2427_5
unknown

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comp(3879..3989)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2427_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3986..5158)
DNA (1173bp) protein (391aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107, ECO:0000313|EMBL:KIO49828.1}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
acetylornithine aminotransferase (EC:2.6.1.11); K00818 acetylornithine aminotransferase [EC:2.6.1.11] rbh
Acetylornithine aminotransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGE3_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2427_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5516..7495)
DNA (1980bp) protein (660aa)
Arginine decarboxylase Lysine decarboxylase Ornithine decarboxylase {ECO:0000313|EMBL:CCU62303.1}; EC=4.1.1.17 {ECO:0000313|EMBL:CCU62303.1};; EC=4.1.1.18 {ECO:0000313|EMBL:CCU62303.1};; EC=4.1.1.19 {ECO:0000313|EMBL:CCU62303.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
arginine decarboxylase (EC:4.1.1.19); K01583 arginine decarboxylase [EC:4.1.1.19] rbh
Arginine decarboxylase Lysine decarboxylase Ornithine decarboxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIN1_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2427_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7623..9074
DNA (1452bp) protein (484aa)
Putative membrane-bound ClpP-class protease associated with aq_911 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIB6_9PROT rbh
Putative membrane-bound ClpP-class protease associated with aq_911 {ECO:0000313|EMBL:CCU62302.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K07403 membrane-bound serine protease (ClpP class) rbh
SCNpilot_cont_1000_p_scaffold_2427_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9107..9985
DNA (879bp) protein (293aa)
SPFH domain, Band 7 family protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA80_NITMU rbh
hypothetical protein rbh
SPFH domain, Band 7 family protein {ECO:0000313|EMBL:ABB74341.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_2427_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10042..10305)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RS20_NITMU
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
30S ribosomal protein S20 {ECO:0000255|HAMAP-Rule:MF_00500}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_2427_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10558..12096
DNA (1539bp) protein (513aa)
Proposed peptidoglycan lipid II flippase MurJ n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIM9_9PROT rbh
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
integral membrane protein MviN; K03980 virulence factor rbh
SCNpilot_cont_1000_p_scaffold_2427_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12360..13382
DNA (1023bp) protein (341aa)
VacJ-like lipoprotein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA83_NITMU rbh
VacJ-like lipoprotein; K04754 lipoprotein rbh
VacJ-like lipoprotein {ECO:0000313|EMBL:ABB74338.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_1000_p_scaffold_2427_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13563..14444)
DNA (882bp) protein (294aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
heat shock protein HtpX; K03799 heat shock protein HtpX [EC:3.4.24.-] rbh
Protease HtpX homolog n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGD6_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2427_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14611..15093)
DNA (483bp) protein (161aa)
Disulfide bond formation protein B n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=DSBB_NITMU
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
disulfide bond formation protein DsbB; K03611 disulfide bond formation protein DsbB
SCNpilot_cont_1000_p_scaffold_2427_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15115..16119)
DNA (1005bp) protein (335aa)
putative RNA methylase; K07444 putative N6-adenine-specific DNA methylase [EC:2.1.1.-] rbh
23S rRNA (Guanine-N-2-)-methyltransferase rlmL n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI71_9PROT rbh
DNA methylase {ECO:0000313|EMBL:KIO49835.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_1000_p_scaffold_2427_16
unknown

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16376..16666
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_2427_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16572..17927)
DNA (1356bp) protein (452aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] rbh
Exodeoxyribonuclease 7 large subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIB1_9PROT rbh
SCNpilot_cont_1000_p_scaffold_2427_18
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18326..18490
DNA (165bp) protein (55aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AFX8_NITEC
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:ABI59754.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
Displaying 18 items

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