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SCNpilot_cont_300_bf_scaffold_2254_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2254_curated_1
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..280)
DNA (279bp) protein (93aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035D4C90
SCNpilot_cont_300_bf_scaffold_2254_curated_2
unknown

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460..843
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2254_curated_3
unknown

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943..1086
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2254_curated_4
unknown

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comp(2152..2289)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2254_curated_5
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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2468..3100
DNA (633bp) protein (211aa)
Malyl-CoA lyase {ECO:0000313|EMBL:CDO59153.1}; EC=4.1.3.24 {ECO:0000313|EMBL:CDO59153.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
citrate lyase; K08691 malyl-CoA lyase [EC:4.1.3.24]
Malyl-CoA lyase n=1 Tax=Novispirillum itersonii RepID=UPI000376B452
SCNpilot_cont_300_bf_scaffold_2254_curated_6
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3189..3386
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q3B4_METSZ
Antitoxin {ECO:0000313|EMBL:KFG70611.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2254_curated_7

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3383..3742
DNA (360bp) protein (120aa)
Ribonuclease VapC n=2 Tax=Burkholderia cenocepacia RepID=A0B327_BURCH
Uncharacterized protein {ECO:0000313|EMBL:KKN80980.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PilT protein-like protein; K07062
SCNpilot_cont_300_bf_scaffold_2254_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3752..4672)
DNA (921bp) protein (307aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMM8_9RHIZ
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EIM25220.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_2254_curated_9
unknown

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comp(4686..4844)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2254_curated_10
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4814..5233)
DNA (420bp) protein (140aa)
Uncharacterized proteim n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09AV8_STIAD
hypothetical protein
Uncharacterized proteim {ECO:0000313|EMBL:ADO72418.1}; Uncharacterized protein {ECO:0000313|EMBL:EAU68921.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_cont_300_bf_scaffold_2254_curated_11
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5358..6314
DNA (957bp) protein (319aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhod
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SIV5_RHOPH
SCNpilot_cont_300_bf_scaffold_2254_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6333..6776
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B2W8_RHILS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS56816.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_300_bf_scaffold_2254_curated_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6789..7943)
DNA (1155bp) protein (385aa)
Epoxide hydrolase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTW4_PARL1
Epocide hydrolase domain-containing protein {ECO:0000313|EMBL:GAK45407.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
epocide hydrolase domain-containing protein
SCNpilot_cont_300_bf_scaffold_2254_curated_14
unknown

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comp(7940..8242)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2254_curated_15
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8356..8601)
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas RepID=M5CR14_STEMA
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_cont_300_bf_scaffold_2254_curated_16
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8598..9257)
DNA (660bp) protein (220aa)
peptidoglycan-binding protein n=1 Tax=Xanthomonas campestris RepID=UPI00005CDC28
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_cont_300_bf_scaffold_2254_curated_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9384..12107)
DNA (2724bp) protein (908aa)
Protein translocase subunit SecA n=2 Tax=Parvibaculum RepID=SECA_PARL1
preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA
Protein translocase subunit SecA {ECO:0000255|HAMAP-Rule:MF_01382}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_2254_curated_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12334..13290
DNA (957bp) protein (319aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BY7_RHOPB
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Displaying 18 items

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