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SCNpilot_cont_300_bf_scaffold_204_curated

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Displaying items 1-30 of 273 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_204_curated_1
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265..2856)
DNA (2592bp) protein (864aa)
protein disaggregation chaperone n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D96D01
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
clpB; ATP-dependent protease, ATPase subunit
SCNpilot_cont_300_bf_scaffold_204_curated_2
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2976..4343)
DNA (1368bp) protein (456aa)
DNA repair protein radA n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7TAP8_ALCXX
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
SCNpilot_cont_300_bf_scaffold_204_curated_3
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4346..5449)
DNA (1104bp) protein (368aa)
dadX; catabolic alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase {ECO:0000255|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000255|HAMAP-Rule:MF_01201};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Alanine racemase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=ALR_BORPD rbh
SCNpilot_cont_300_bf_scaffold_204_curated_4
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5592..6461
DNA (870bp) protein (290aa)
hpnC; squalene synthase HpnC (EC:2.4.1.21)
Squalene synthase HpnC {ECO:0000313|EMBL:ADP17504.1}; EC=2.4.1.21 {ECO:0000313|EMBL:ADP17504.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Squalene synthase HpnC n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HV67_ACHXA
SCNpilot_cont_300_bf_scaffold_204_curated_5
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6451..7314
DNA (864bp) protein (288aa)
Phytoene synthase (EC:2.5.1.32)
Putative phytoene synthase n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F431_9BURK
Putative phytoene synthase {ECO:0000313|EMBL:EHK66926.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
SCNpilot_cont_300_bf_scaffold_204_curated_6
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7293..8681
DNA (1389bp) protein (463aa)
Phytoene desaturase, pro-zeta-carotene producing (EC:1.-.-.-)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00035D7FD3
Flavin containing amine oxidoreductase family protein {ECO:0000313|EMBL:EJO30301.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
SCNpilot_cont_300_bf_scaffold_204_curated_7
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8695..9153)
DNA (459bp) protein (153aa)
Molybdenum cofactor biosynthesis protein E n=1 Tax=Azoarcus sp. KH32C RepID=H0PTI2_9RHOO
moaE; molybdenum cofactor biosynthesis protein E
Molybdenum cofactor biosynthesis protein E {ECO:0000313|EMBL:BAL24147.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_cont_300_bf_scaffold_204_curated_8
blood disease bacterium R229, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9155..9412)
DNA (258bp) protein (86aa)
Molybdenum cofactor biosynthesis protein D n=2 Tax=Ralstonia RepID=D8NU78_RALSL
moaD; molybdenum cofactor biosynthesis protein D; K03636 molybdopterin synthase sulfur carrier subunit
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=741978 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="blood disease bacterium R229.;"
SCNpilot_cont_300_bf_scaffold_204_curated_9
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9416..10642)
DNA (1227bp) protein (409aa)
molybdopterin biosynthesis protein, molybdenum incorporation step; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Molybdopterin biosynthesis protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CUI8_9BURK
Molybdopterin biosynthesis protein {ECO:0000313|EMBL:EIJ47281.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
SCNpilot_cont_300_bf_scaffold_204_curated_10
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10698..12110)
DNA (1413bp) protein (471aa)
Threonine synthase {ECO:0000313|EMBL:EHK65147.1}; EC=4.2.3.1 {ECO:0000313|EMBL:EHK65147.1};; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
thrC; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1]
Threonine synthase n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F982_9BURK
SCNpilot_cont_300_bf_scaffold_204_curated_11
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12119..13426)
DNA (1308bp) protein (436aa)
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1331279 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis STO1-CHOC-0019.;"
Homoserine dehydrogenase n=37 Tax=Bordetella RepID=F4LIA2_BORPC
SCNpilot_cont_300_bf_scaffold_204_curated_12
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13749..14132
DNA (384bp) protein (128aa)
Hypothetical 12.7 kDa protein in helA 5'region n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IQS4_BORPD
hypothetical protein; K09008 hypothetical protein
Hypothetical 12.7 kDa protein in helA 5'region {ECO:0000313|EMBL:CAP43091.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_300_bf_scaffold_204_curated_13
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14183..14647
DNA (465bp) protein (155aa)
AhpC/Tsa family antioxidant; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Alkyl hydroperoxide reductase n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0JFJ1_ALCFA
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:EJC62504.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis subsp. faecalis NCIB 8687.;"
SCNpilot_cont_300_bf_scaffold_204_curated_14
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14756..16498
DNA (1743bp) protein (581aa)
Uncharacterized protein n=2 Tax=Bordetella holmesii RepID=M5NPW1_9BORD
PhoH family protein {ECO:0000313|EMBL:KCB36882.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_204_curated_15
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16500..17897
DNA (1398bp) protein (466aa)
CoA-transferase III family protein n=1 Tax=Burkholderia thailandensis MSMB121 RepID=N0APN2_BURTH
CAIB/BAIF family CoA transferase {ECO:0000313|EMBL:KDP88883.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
coA-transferase III family protein
SCNpilot_cont_300_bf_scaffold_204_curated_16
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17894..18595)
DNA (702bp) protein (234aa)
Putative amino-acid ATP-binding ABC transporter protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGP4_METPP
amino-acid ATP-binding ABC transporter protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_cont_300_bf_scaffold_204_curated_17
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18592..19374)
DNA (783bp) protein (261aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:KDB07298.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KDB07298.1};; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
ABC transporter related protein n=1 Tax=Burkholderia sp. RPE64 RepID=R4WHN3_9BURK
ABC transporter related protein
SCNpilot_cont_300_bf_scaffold_204_curated_18
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19367..20629)
DNA (1263bp) protein (421aa)
Branched-chain amino acid ABC transporter permease n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G382_9BURK
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:EOA03372.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
putative ABC-type branched-chain amino acid transporter, membrane component
SCNpilot_cont_300_bf_scaffold_204_curated_19
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20626..21585)
DNA (960bp) protein (320aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AE9_POLSJ
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ABE44493.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_cont_300_bf_scaffold_204_curated_20
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21722..23233
DNA (1512bp) protein (504aa)
UPF0061 protein AXXA_20157 n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T507_ALCXX
UPF0061 protein AXXA_20157 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
Selenoprotein O and cysteine-containing homologs
SCNpilot_cont_300_bf_scaffold_204_curated_21
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23242..23643
DNA (402bp) protein (134aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
Peptide methionine sulfoxide reductase MsrB n=8 Tax=Bordetella RepID=K0MLB3_BORPB
msrB; peptide methionine sulfoxide reductase
SCNpilot_cont_300_bf_scaffold_204_curated_22
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23738..24328
DNA (591bp) protein (197aa)
Probable intracellular septation protein A n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=YCIB_CUPTR
ispZ; intracellular septation protein a; K06190 intracellular septation protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_cont_300_bf_scaffold_204_curated_23
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24325..24609
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000364179F
BolA-like protein; K05527 BolA protein
BolA-like protein {ECO:0000313|EMBL:CAE38636.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
SCNpilot_cont_300_bf_scaffold_204_curated_24
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24663..25430
DNA (768bp) protein (256aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
PPIC-type PPIASE domain-containing protein 1 (EC:5.2.1.8); K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Achromobacter piechaudii HLE RepID=J4YP08_9BURK
SCNpilot_cont_300_bf_scaffold_204_curated_25
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25853..26899
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003040650
Porin {ECO:0000313|EMBL:EJO31996.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
outer membrane porin protein
SCNpilot_cont_300_bf_scaffold_204_curated_26
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27308..28363
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003040650
outer membrane porin protein
Outer membrane porin protein {ECO:0000313|EMBL:AEC20305.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_cont_300_bf_scaffold_204_curated_27
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28457..32485)
DNA (4029bp) protein (1343aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella b
Phosphoribosylformylglycinamidine synthase n=3 Tax=Bordetella bronchiseptica RepID=K0MJJ2_BORBM
purL; phosphoribosylformylglycinamidine synthase
SCNpilot_cont_300_bf_scaffold_204_curated_28
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32691..33962
DNA (1272bp) protein (424aa)
dadA3; D-amino acid dehydrogenase small subunit (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
Amino acid dehydrogenase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2J420_9BURK
Amino acid dehydrogenase {ECO:0000313|EMBL:ESJ24972.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
SCNpilot_cont_300_bf_scaffold_204_curated_29
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33966..35492
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R509_CUPTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ69391.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCNpilot_cont_300_bf_scaffold_204_curated_30
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35514..36251)
DNA (738bp) protein (246aa)
ABC transporter, ATP-binding protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XDT7_9BURK
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KCV59333.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
Displaying items 1-30 of 273 in total

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