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SCNpilot_cont_500_bf_scaffold_213

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_213_1
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71..796)
DNA (726bp) protein (242aa)
Conjugal transfer antirestriction ArdC-like protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S5I4_RHIET
conjugal transfer antirestriction ArdC-like protein
Conjugal transfer antirestriction ArdC-like protein {ECO:0000313|EMBL:AGS25185.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_500_bf_scaffold_213_2
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1059..1361
DNA (303bp) protein (101aa)
UPI0003D06CE3 related cluster n=1 Tax=unknown RepID=UPI0003D06CE3
Prevent-host-death protein {ECO:0000313|EMBL:ESZ13027.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_213_3
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1358..1831
DNA (474bp) protein (158aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
UPI0003CFB1B5 related cluster n=1 Tax=unknown RepID=UPI0003CFB1B5
plasmid stability protein; K07062
SCNpilot_cont_500_bf_scaffold_213_4
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1869..2453)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3M5_AGRVS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM39473.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_213_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3014..3337)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QEY0_NITHX
Uncharacterized protein {ECO:0000313|EMBL:AIC30075.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_213_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3334..4224)
DNA (891bp) protein (297aa)
Riorf95 protein n=1 Tax=Agrobacterium rhizogenes RepID=Q9F5F5_AGRRH
Riorf95 protein {ECO:0000313|EMBL:BAB16214.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_213_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4221..4670)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SCT1_RHIET
Uncharacterized protein {ECO:0000313|EMBL:AIC29692.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_213_8
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4762..6522)
DNA (1761bp) protein (587aa)
ParB domain protein nuclease n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7Y4_OCHA4 rbh
plasmid partitioning protein; K03497 chromosome partitioning protein, ParB family rbh
ParB domain protein nuclease {ECO:0000313|EMBL:ABS17338.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_213_9
unknown

Not on your lists

6867..7373
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_213_10
unknown

Not on your lists

7493..7591
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_213_11
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7604..12709)
DNA (5106bp) protein (1702aa)
Rcorf62 n=1 Tax=Agrobacterium rhizogenes RepID=A8W058_AGRRH rbh
Rcorf62 {ECO:0000313|EMBL:ABW33619.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
N-6 DNA methylase rbh
SCNpilot_cont_500_bf_scaffold_213_12
unknown

Not on your lists

comp(12890..13291)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_213_13
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13291..13896)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7X1_OCHA4 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EXL01610.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_cont_500_bf_scaffold_213_14
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14010..15002)
DNA (993bp) protein (331aa)
Rcorf59 n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PM97_RHIML rbh
rcorf59 rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM39287.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_500_bf_scaffold_213_15
unknown

Not on your lists

comp(15034..15165)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_213_16
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15199..15381)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQ73_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS70169.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_213_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15712..16164)
DNA (453bp) protein (151aa)
Nuclease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDH4_9RHIZ
Thermonuclease-like protein {ECO:0000313|EMBL:EYR78502.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nuclease
SCNpilot_cont_500_bf_scaffold_213_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16161..16478)
DNA (318bp) protein (106aa)
Single-strand binding protein family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXZ5_9RHIZ
Signal transduction histidine kinase {ECO:0000313|EMBL:EYR78501.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative single-stranded DNA-binding protein
SCNpilot_cont_500_bf_scaffold_213_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16511..17020)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFY8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78500.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_213_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17071..17328
DNA (258bp) protein (86aa)
Helix-turn-helix protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CI16_9RHIZ
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:EYR78499.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
helix-turn-helix domain-containing protein
SCNpilot_cont_500_bf_scaffold_213_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17486..17911
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCQ5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82781.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_213_22
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18195..18383
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SA93_RHIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGS24386.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_500_bf_scaffold_213_23
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18380..21256
DNA (2877bp) protein (959aa)
N-6 DNA methylase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JRF0_HYPDA rbh
N-6 DNA methylase rbh
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_cont_500_bf_scaffold_213_24
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21256..21966
DNA (711bp) protein (237aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JRE9_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ22178.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_cont_500_bf_scaffold_213_25
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22204..24273
DNA (2070bp) protein (690aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
UvrD/REP helicase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F249_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_213_26
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24275..24550
DNA (276bp) protein (92aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113, ECO:0000256|SAAS:SAAS00019792};; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=1 Tax=Rhizobium freirei PRF 81 RepID=N6USM9_9RHIZ
SCNpilot_cont_500_bf_scaffold_213_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24581..25363
DNA (783bp) protein (261aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFM9_9RHIZ
SCNpilot_cont_500_bf_scaffold_213_28
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25463..26053
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Rhizobium phaseoli RepID=UPI0002E24B2C
Uncharacterized protein {ECO:0000313|EMBL:KEC78446.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_213_29
unknown

Not on your lists

comp(26133..26732)
DNA (600bp) protein (200aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_213_30
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26777..27565
DNA (789bp) protein (263aa)
Exodeoxyribonuclease {ECO:0000313|EMBL:CDM62604.1}; EC=3.1.11.2 {ECO:0000313|EMBL:CDM62604.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
exoA; exodeoxyribonuclease (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III n=1 Tax=Rhizobium sp. CF122 RepID=J3BR65_9RHIZ
Displaying items 1-30 of 104 in total

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