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SCNpilot_cont_500_bf_scaffold_213

Search features with annotation key words

Displaying items 61-90 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_213_61
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55006..55329
DNA (324bp) protein (108aa)
Type IV secretory pathway, VirB2 component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHH5_9RHIZ
Type IV secretory pathway, VirB2 component {ECO:0000313|EMBL:EYR82772.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein trbc; K03197 type IV secretion system protein VirB2
SCNpilot_cont_500_bf_scaffold_213_62
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55331..55621
DNA (291bp) protein (97aa)
Type IV secretory pathway, VirB3 component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFD6_9RHIZ
Type IV secretory pathway, VirB3 component {ECO:0000313|EMBL:EYR82771.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type IV secretory pathway, VirB3-like; K03198 type IV secretion system protein VirB3
SCNpilot_cont_500_bf_scaffold_213_63
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55618..58029
DNA (2412bp) protein (804aa)
Type IV secretion system protein VirB4 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXH1_9RHIZ rbh
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:EYR82770.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
virB4-2; conjugal transfer protein; K03199 type IV secretion system protein VirB4
SCNpilot_cont_500_bf_scaffold_213_64
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58022..59185
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCX9_9RHIZ rbh
Putative soluble lytic transglycosylase {ECO:0000313|EMBL:EYR82769.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_213_65
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59197..59913
DNA (717bp) protein (239aa)
UPI0003D04ACA related cluster n=1 Tax=unknown RepID=UPI0003D04ACA
Conjugal transfer protein {ECO:0000313|EMBL:EYR82768.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein
SCNpilot_cont_500_bf_scaffold_213_66
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59920..60093
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQQ1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82767.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_213_67
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60098..61117
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN46_9RHIZ rbh
Type IV secretory pathway, VirB6 component {ECO:0000313|EMBL:EYR82766.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein; K03201 type IV secretion system protein VirB6
SCNpilot_cont_500_bf_scaffold_213_68
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61172..61405
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5J0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82765.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_213_69
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61422..61793
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL76_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82764.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_213_70
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61948..62682
DNA (735bp) protein (245aa)
VirB8 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVE8_9RHIZ
VirB8 {ECO:0000313|EMBL:EYR82763.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
virB8; type IV secretion protein VirB8; K03203 type IV secretion system protein VirB8
SCNpilot_cont_500_bf_scaffold_213_71
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62679..63464
DNA (786bp) protein (262aa)
P-type conjugative transfer protein VirB9 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQP5_9RHIZ rbh
P-type conjugative transfer protein VirB9 {ECO:0000313|EMBL:EYR82762.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
SCNpilot_cont_500_bf_scaffold_213_72
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63461..64879
DNA (1419bp) protein (473aa)
Type IV secretion system protein VirB10 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN42_9RHIZ rbh
Type IV secretion system protein VirB10 {ECO:0000313|EMBL:EYR82761.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_500_bf_scaffold_213_73
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64876..65874
DNA (999bp) protein (333aa)
Type IV secretion system protein VirB11 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5I5_9RHIZ rbh
Type IV secretion system protein VirB11 {ECO:0000313|EMBL:EYR82760.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11
SCNpilot_cont_500_bf_scaffold_213_74
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65871..67994
DNA (2124bp) protein (708aa)
Conjugal transfer protein TraG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL71_9RHIZ rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:EYR82759.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Protein virD4; K03205 type IV secretion system protein VirD4
SCNpilot_cont_500_bf_scaffold_213_75
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68080..68838)
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A0F1_RHILW rbh
Dehydrogenase {ECO:0000313|EMBL:EYR82758.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_500_bf_scaffold_213_76
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68957..70621)
DNA (1665bp) protein (555aa)
Electron transfer flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:EYR81198.1}; EC=1.5.5.1 {ECO:0000313|EMBL:EYR81198.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
etf; electron transfer flavoprotein-ubiquinone oxidoreductase/putative oxidoreductase (EC:1.5.5.1); K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] rbh
Electron transfer flavoprotein-ubiquinone oxidoreductase/ putative oxidoreductase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MEE0_RHISN rbh
SCNpilot_cont_500_bf_scaffold_213_77
Brucella pinnipedialis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70618..71778)
DNA (1161bp) protein (387aa)
metC; cystathionine beta-lyase (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8]
Cystathionine beta-lyase n=10 Tax=Brucella RepID=C9TUL7_BRUPB
Cystathionine beta-lyase {ECO:0000313|EMBL:EEZ30893.1}; TaxID=520462 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella pinnipedialis M292/94/1.;"
SCNpilot_cont_500_bf_scaffold_213_78
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71808..72341)
DNA (534bp) protein (178aa)
soxG2; sarcosine oxidase subunit gamma (EC:1.5.3.1); K00305 sarcosine oxidase, subunit gamma [EC:1.5.3.1]
Sarcosine oxidase, gamma subunit {ECO:0000313|EMBL:ACP25206.1}; EC=1.5.3.1 {ECO:0000313|EMBL:ACP25206.1};; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
Sarcosine oxidase, gamma subunit n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MCC7_RHISN
SCNpilot_cont_500_bf_scaffold_213_79
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72334..75294)
DNA (2961bp) protein (987aa)
soxA; sarcosine oxidase alpha subunit; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
sarcosine oxidase subunit alpha n=1 Tax=Rhizobium radiobacter RepID=UPI00035DC4BA
Sarcosine oxidase subunit alpha {ECO:0000313|EMBL:EPR07337.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_cont_500_bf_scaffold_213_80
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75291..75563)
DNA (273bp) protein (91aa)
soxD2; sarcosine oxidase subunit delta (EC:1.5.3.1); K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
sarcosine oxidase subunit delta n=1 Tax=Rhizobium mongolense RepID=UPI0003B681ED
Sarcosine oxidase subunit delta {ECO:0000313|EMBL:KDR89558.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
SCNpilot_cont_500_bf_scaffold_213_81
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75588..76838)
DNA (1251bp) protein (417aa)
soxB; sarcosine oxidase beta subunit; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
Sarcosine oxidase beta subunit {ECO:0000313|EMBL:KJX85963.1}; EC=1.5.3.1 {ECO:0000313|EMBL:KJX85963.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Sarcosine oxidase beta subunit n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CG90_AGRT5
SCNpilot_cont_500_bf_scaffold_213_82
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76912..78360)
DNA (1449bp) protein (483aa)
aldehyde dehydrogenase (EC:1.2.1.3); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
Aldehyde dehydrogenase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QX22_RALPI rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:CDN48112.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_cont_500_bf_scaffold_213_83
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(78423..79991)
DNA (1569bp) protein (523aa)
Putative acetolactate synthase large subunit IlvX {ECO:0000313|EMBL:CDX11426.1}; EC=2.2.1.6 {ECO:0000313|EMBL:CDX11426.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00035DF229 rbh
SCNpilot_cont_500_bf_scaffold_213_84
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80009..81244)
DNA (1236bp) protein (412aa)
Aspartate aminotransferase B {ECO:0000313|EMBL:CDX11417.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDX11417.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1]
Aminotransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11C80_MESSB
SCNpilot_cont_500_bf_scaffold_213_85
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81247..82002)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00037B9434
Transcriptional regulator, TetR family {ECO:0000313|EMBL:KCB45352.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
TetR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_213_86
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82008..83225)
DNA (1218bp) protein (406aa)
CoA transferase n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HVF1_PSEST rbh
CoA transferase {ECO:0000313|EMBL:EQM81228.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri MF28.;"
acyl-CoA transferase
SCNpilot_cont_500_bf_scaffold_213_87
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83489..84283)
DNA (795bp) protein (265aa)
occPch; octopine ABC transporter; K10025 arginine/ornithine transport system ATP-binding protein [EC:3.6.3.-]
ABC-type histidine transport system, ATPase component n=1 Tax=Rhizobium sp. AP16 RepID=J2DAG9_9RHIZ
Amino acid transporter {ECO:0000313|EMBL:KJF72738.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_cont_500_bf_scaffold_213_88
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84280..85002)
DNA (723bp) protein (241aa)
Octopine ABC transporter, permease n=1 Tax=Rhizobium sp. Pop5 RepID=K0WDW5_9RHIZ rbh
Octopine ABC transporter, permease {ECO:0000313|EMBL:EJZ21579.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
putative amino acid ABC transporter, permease protein
SCNpilot_cont_500_bf_scaffold_213_89
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85006..85749)
DNA (744bp) protein (248aa)
Octopine ABC transporter permease n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I299_9RHIZ rbh
Octopine ABC transporter permease {ECO:0000313|EMBL:EHK52898.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative amino acid ABC transporter, permease protein
SCNpilot_cont_500_bf_scaffold_213_90
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86136..86750
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Erwinia toletana RepID=UPI00037B353E
TetR family transcriptional regulator
Regulatory protein TetR {ECO:0000313|EMBL:AEF21263.1}; TaxID=743720 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva (strain 12-X).;"
Displaying items 61-90 of 104 in total

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