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SCNpilot_cont_500_bf_scaffold_124_4

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(3339..3917)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR38_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 82.3
  • Coverage: 192.0
  • Bit_score: 306
  • Evalue 1.60e-80
  • rbh
RNA polymerase sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 82.3
  • Coverage: 192.0
  • Bit_score: 306
  • Evalue 5.00e-81
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.3
  • Coverage: 192.0
  • Bit_score: 306
  • Evalue 2.20e-80

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Taxonomy

Rhizobium tropici → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 579
GTGACGATATTGTCCGATCGCGAGTTGCTATCGCGGGAAGCGATCAACCAACTGGTTTTGGCGATCGCAACAAGACAGGATCGTCAGGCTTTCGCCGAGCTGTTCAATTTTGCAGCGCCCAGGATCAAGGCGTTCATGATGCGCTCGGGGTCCCCGCCTGAAGTGGCGGAAGAAATAGCCCAGGAAGCGATGCTCCTGGTCTGGCGCAAGGCCTCCTATTTCGATCCCGCACGCGCAGGCGCGATGACATGGATCTTTACGATCGCACGGAATTTGCGCATCGACTTCCAGCGGAAGGCCCAAACGCTCAAGCAGGCTTCCGGGAGCGAGCCGGACGAATATCAGCCATCGGAACCGACGCCGGAGGAGATCCTCGTCGTCAGGGCGGATGAAGATAGGGTCCGGGCCGCGCTGCAGGCGCTCAGTTCGGAACAAGAGGAAATCATCAGATTGTCCTTTTTTCGTGATCGTCCTCATTCCGAAATCGCCAAGGAACTGGATCTGCCGCTTGGGACAGTGAAATCACGTATCAGACGTGCGCTTGGCAGGTTGAGGGACATGCTGGAAGAAACACTATGA
PROTEIN sequence
Length: 193
VTILSDRELLSREAINQLVLAIATRQDRQAFAELFNFAAPRIKAFMMRSGSPPEVAEEIAQEAMLLVWRKASYFDPARAGAMTWIFTIARNLRIDFQRKAQTLKQASGSEPDEYQPSEPTPEEILVVRADEDRVRAALQALSSEQEEIIRLSFFRDRPHSEIAKELDLPLGTVKSRIRRALGRLRDMLEETL*