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SCNpilot_cont_500_bf_scaffold_12

Search features with annotation key words

Displaying items 91-120 of 785 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_12_91
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98867..99820
DNA (954bp) protein (318aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WG75_9SPHN rbh
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_cont_500_bf_scaffold_12_92
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99817..100563
DNA (747bp) protein (249aa)
uroporphyrinogen-III synthase (EC:4.2.1.75); K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen-III synthase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EAH2_9SPHN
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EHJ61609.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_cont_500_bf_scaffold_12_93
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

100560..101486
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYX2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47718.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_12_94
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101483..102736)
DNA (1254bp) protein (418aa)
2-octaprenyl-6-methoxyphenol hydroxylase (EC:1.14.13.-); K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] rbh
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IIS1_9SPHN rbh
Ubiquinone biosynthesis protein UbiH {ECO:0000313|EMBL:KHK93464.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_cont_500_bf_scaffold_12_95
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102762..104489)
DNA (1728bp) protein (576aa)
Alkaline phosphatase {ECO:0000256|PIRNR:PIRNR031924}; EC=3.1.3.1 {ECO:0000256|PIRNR:PIRNR031924};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZC46_9SPHN rbh
type I phosphodiesterase/nucleotide pyrophosphatase rbh
SCNpilot_cont_500_bf_scaffold_12_96
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104622..106709
DNA (2088bp) protein (696aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I0S3_9SPHN rbh
Thiol:disulfide interchange protein {ECO:0000313|EMBL:KHK93721.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
cytochrome c biogenesis protein, transmembrane region rbh
SCNpilot_cont_500_bf_scaffold_12_97
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107153..108430)
DNA (1278bp) protein (426aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Coproporphyrinogen-III oxidase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VBG2_9SPHN
SCNpilot_cont_500_bf_scaffold_12_98
unknown

Not on your lists

comp(108529..108762)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_12_99
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108759..108932)
DNA (174bp) protein (58aa)
Cytochrome c oxidase cbb3-type maturation protein CcoS n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMA7_9SPHN
Cytochrome oxidase maturation protein Cbb3 {ECO:0000313|EMBL:KEO86165.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
cbb3-type cytochrome oxidase maturation protein
SCNpilot_cont_500_bf_scaffold_12_100
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108929..111076)
DNA (2148bp) protein (716aa)
Heavy metal translocating P-type ATPase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G565_NOVAD rbh
Type cbb3 cytochrome oxidase biogenesis protein ccoI {ECO:0000313|EMBL:GAO56656.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
heavy metal translocating P-type ATPase rbh
SCNpilot_cont_500_bf_scaffold_12_101
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111092..111589)
DNA (498bp) protein (166aa)
integral membrane protein linked to a cation pump-like n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E2B7
Scaffold24, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30500.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_12_102
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111613..113070)
DNA (1458bp) protein (486aa)
4Fe-4S ferredoxin, iron-sulfur binding n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IG78_9SPHN
Nitrogen fixation protein FixG {ECO:0000313|EMBL:KHK92269.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
4Fe-4S ferredoxin
SCNpilot_cont_500_bf_scaffold_12_103
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113073..114029)
DNA (957bp) protein (319aa)
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8A6_9SPHN
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome c oxidase, cbb3-type subunit III; K00406 cytochrome c oxidase cbb3-type subunit III
SCNpilot_cont_500_bf_scaffold_12_104
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114016..114192)
DNA (177bp) protein (59aa)
cb-type cytochrome c oxidase subunit IV (EC:1.9.3.1); K00407 cytochrome c oxidase cbb3-type subunit IV
Cytochrome c oxidase cbb3-type subunit IV n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMA5_9SPHN
Putative membrane protein {ECO:0000313|EMBL:AJA08069.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_cont_500_bf_scaffold_12_105
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114189..114950)
DNA (762bp) protein (254aa)
Cytochrome c oxidase, cbb3-type, subunit II n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8A4_9SPHN rbh
Cytochrome c oxidase, cbb3-type, subunit II {ECO:0000313|EMBL:EGD59121.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
cytochrome c oxidase cbb3-type subunit II; K00405 cytochrome c oxidase cbb3-type subunit II rbh
SCNpilot_cont_500_bf_scaffold_12_106
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114963..116621)
DNA (1659bp) protein (553aa)
Cytochrome c oxidase subunit ccoN {ECO:0000313|EMBL:GAO56662.1}; EC=1.9.3.1 {ECO:0000313|EMBL:GAO56662.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cb-type cytochrome c oxidase subunit I (EC:1.9.3.1); K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1] rbh
Cb-type cytochrome c oxidase subunit I n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IG74_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_12_107
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117110..117811
DNA (702bp) protein (234aa)
OmpW n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBX0_9SPHN
Outer membrane protein W {ECO:0000313|EMBL:GAO56663.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
OmpW; K07275 outer membrane protein
SCNpilot_cont_500_bf_scaffold_12_108
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(117993..118691)
DNA (699bp) protein (233aa)
CRP/FNR family transcriptional regulator,anaerobic regulatory protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VKY8_9SPHN rbh
CRP/FNR family transcriptional regulator,anaerobic regulatory protein {ECO:0000313|EMBL:EJU11260.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
CRP/FNR family transcriptional regulator,anaerobic regulatory protein; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein rbh
SCNpilot_cont_500_bf_scaffold_12_109
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(119051..119824)
DNA (774bp) protein (258aa)
RNA polymerase sigma factor for flagellar operon FliA n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IIS6_9SPHN rbh
RNA polymerase sigma factor for flagellar operon FliA; K02405 RNA polymerase sigma factor for flagellar operon FliA rbh
RNA polymerase sigma factor for flagellar operon FliA {ECO:0000313|EMBL:CCA94144.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_500_bf_scaffold_12_110
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(119821..121956)
DNA (2136bp) protein (712aa)
Flagellar biosynthesis protein FlhA n=2 Tax=Novosphingobium RepID=F6IIS7_9SPHN rbh
flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA rbh
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:CCA94145.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_500_bf_scaffold_12_111
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121960..122901)
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7L2_9SPHN
Phage tail fibers {ECO:0000313|EMBL:GAO55285.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lytic transglycosylase catalytic subunit subunit
SCNpilot_cont_500_bf_scaffold_12_112
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123055..123408)
DNA (354bp) protein (118aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7L4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59405.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_12_113
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123412..123735)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000369685E
Uncharacterized protein {ECO:0000313|EMBL:KHS44308.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein; K02398 negative regulator of flagellin synthesis FlgM
SCNpilot_cont_500_bf_scaffold_12_114
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123927..124484)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HXS8_9SPHN
Flagellar protein {ECO:0000313|EMBL:KHS44309.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar protein
SCNpilot_cont_500_bf_scaffold_12_115
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124565..125044)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G576_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL24845.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_cont_500_bf_scaffold_12_116
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125041..125718)
DNA (678bp) protein (226aa)
Flagellar motor component n=1 Tax=Novosphingobium sp. AP12 RepID=J3A1M2_9SPHN
Flagellar motor rotation protein motA {ECO:0000313|EMBL:GAO55280.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chemotaxis protein MotA; K02556 chemotaxis protein MotA
SCNpilot_cont_500_bf_scaffold_12_117
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125975..126337
DNA (363bp) protein (121aa)
flagellar basal body rod protein FlgB n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B49D85
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
flagellar basal-body rod protein FlgB; K02387 flagellar basal-body rod protein FlgB
SCNpilot_cont_500_bf_scaffold_12_118
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126340..126747
DNA (408bp) protein (136aa)
Flagellar basal-body rod protein FlgC n=2 Tax=Novosphingobium RepID=F6IIT4_9SPHN
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar basal-body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
SCNpilot_cont_500_bf_scaffold_12_119
Zymomonas mobilis, Zymomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126747..127097
DNA (351bp) protein (117aa)
flagellar basal body rod modification protein FlgD n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B605C4
flagellar hook capping protein
Flagellar hook capping protein {ECO:0000313|EMBL:AEJ83972.1}; TaxID=542 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis.;"
SCNpilot_cont_500_bf_scaffold_12_120
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127126..127938
DNA (813bp) protein (271aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7M2_9SPHN
Flagellar hook protein FlgE {ECO:0000313|EMBL:KHS44315.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
flagellar hook protein FlgE
Displaying items 91-120 of 785 in total

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