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SCNpilot_cont_500_bf_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 785 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_12_1
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..166)
DNA (165bp) protein (55aa)
electron transfer flavoprotein subunit beta n=1 Tax=Sphingomonas elodea RepID=UPI00026319D3
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:KFD26091.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
SCNpilot_cont_500_bf_scaffold_12_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(205..996)
DNA (792bp) protein (264aa)
enoyl-CoA hydratase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B36988
Putative enoyl-CoA hydratase {ECO:0000313|EMBL:GAD48408.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
enoyl-CoA hydratase PaaG
SCNpilot_cont_500_bf_scaffold_12_3
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(996..2117)
DNA (1122bp) protein (374aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
3-ketoacyl-CoA thiolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B43CF1 rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EJU13811.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_cont_500_bf_scaffold_12_4
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2294..3265
DNA (972bp) protein (324aa)
alcohol dehydrogenase; K00344 NADPH2:quinone reductase [EC:1.6.5.5]
Alcohol dehydrogenase, zinc-binding domain protein n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XP21_PSEMY
Alcohol dehydrogenase, zinc-binding domain protein {ECO:0000313|EMBL:ABP83087.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
SCNpilot_cont_500_bf_scaffold_12_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3262..4596)
DNA (1335bp) protein (445aa)
Aryl-beta-glucosidase {ECO:0000313|EMBL:ABD25234.1}; EC=3.2.1.21 {ECO:0000313|EMBL:ABD25234.1};; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Aryl-beta-glucosidase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA89_NOVAD rbh
glycoside hydrolase rbh
SCNpilot_cont_500_bf_scaffold_12_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4593..4979)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAG7_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25156.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_12_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4984..5883)
DNA (900bp) protein (300aa)
Esterase/lipase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA90_NOVAD rbh
Esterase/lipase-like protein {ECO:0000313|EMBL:KHS41625.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
esterase/lipase-like rbh
SCNpilot_cont_500_bf_scaffold_12_8
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5880..6875)
DNA (996bp) protein (332aa)
Xylose isomerase-like TIM barrel n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IDJ5_9SPHN rbh
xylose isomerase-like TIM barrel domain-containing protein rbh
Xylose isomerase-like TIM barrel {ECO:0000313|EMBL:CCA90370.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_500_bf_scaffold_12_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6880..8088)
DNA (1209bp) protein (403aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAG5_NOVAD rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABD25158.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_12_10
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8620..10833
DNA (2214bp) protein (738aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B32A15 rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB08031.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
TonB-dependent receptor rbh
SCNpilot_cont_500_bf_scaffold_12_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10948..11856
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G901_NOVAD rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KHS42629.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_12_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11999..13114
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IDL8_9SPHN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCA90393.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_500_bf_scaffold_12_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13131..14033
DNA (903bp) protein (301aa)
glyoxalase n=1 Tax=Sphingomonas elodea RepID=UPI000263104E rbh
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:KHS47021.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
glyoxalase/bleomycin resistance protein/dioxygenase rbh
SCNpilot_cont_500_bf_scaffold_12_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14033..14476
DNA (444bp) protein (148aa)
SnoaL-like polyketide cyclase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WX51_9SPHN
DNA, contig: SP630 {ECO:0000313|EMBL:GAN13982.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_12_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14491..15648
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAG2_NOVAD rbh
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein {ECO:0000313|EMBL:KHS47020.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_12_16
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15645..16436
DNA (792bp) protein (264aa)
cyclase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B45E9B rbh
ScaffoldA23, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29449.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
putative cyclase rbh
SCNpilot_cont_500_bf_scaffold_12_17
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16439..17401
DNA (963bp) protein (321aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EG67_9SPHN rbh
ScaffoldA23, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29463.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
fumarylacetoacetate (FAA) hydrolase rbh
SCNpilot_cont_500_bf_scaffold_12_18
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17398..18177)
DNA (780bp) protein (260aa)
DeoR family transcripitonal regulator n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H2V1_9SPHN rbh
DeoR family transcripitonal regulator {ECO:0000313|EMBL:EZP74019.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
DeoR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_12_19
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18276..19334)
DNA (1059bp) protein (353aa)
sugar:proton symporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B738D1 rbh
Rhamnose-proton symporter {ECO:0000313|EMBL:KHS48255.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
rhamnose-proton symporter; K02856 L-rhamnose-H+ transport protein rbh
SCNpilot_cont_500_bf_scaffold_12_20
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19358..20497)
DNA (1140bp) protein (380aa)
L-lactate dehydrogenase {ECO:0000313|EMBL:KFG91043.1}; EC=1.1.2.3 {ECO:0000313|EMBL:KFG91043.1};; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
L-lactate dehydrogenase (cytochrome) (EC:1.1.2.3); K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] rbh
L-lactate dehydrogenase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HSJ8_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_12_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20497..21873)
DNA (1377bp) protein (459aa)
Carbohydrate kinase, FGGY n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9H7_NOVAD rbh
carbohydrate kinase rbh
Carbohydrate kinase, FGGY {ECO:0000313|EMBL:ABD25496.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_12_22
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22113..24206
DNA (2094bp) protein (698aa)
short-chain dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B34E47 rbh
Short chain dehydrogenase {ECO:0000313|EMBL:KHS46778.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
short chain dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_12_23
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24229..25521
DNA (1293bp) protein (431aa)
xylose isomerase-like TIM barrel domain-containing protein; K01820 [EC:5.3.1.-] rbh
Xylose isomerase-like TIM barrel n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7K7_NOVAD rbh
Xylose isomerase-like TIM barrel {ECO:0000313|EMBL:ABD26166.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_12_24
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25658..29086
DNA (3429bp) protein (1143aa)
Glycoside hydrolase family 2, sugar binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7K6_NOVAD rbh
Glycoside hydrolase family 2, sugar binding protein {ECO:0000313|EMBL:ABD26167.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
glycoside hydrolase rbh
SCNpilot_cont_500_bf_scaffold_12_25
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29083..29544
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAG1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS47019.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_12_26
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29566..30462
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MG36_9SPHN rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCW15704.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_12_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30557..31786
DNA (1230bp) protein (410aa)
Amidohydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEB1_NOVAD rbh
amidohydrolase rbh
Amidohydrolase {ECO:0000313|EMBL:ABP64272.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_12_28
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31793..33274
DNA (1482bp) protein (494aa)
monooxygenase, FAD-binding; K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] rbh
Monooxygenase, FAD-binding n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEB2_NOVAD rbh
Monooxygenase, FAD-binding {ECO:0000313|EMBL:ABP64273.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_12_29
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33271..33678
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEB3_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS46115.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_12_30
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33693..34631
DNA (939bp) protein (313aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEB4_NOVAD rbh
glyoxalase/bleomycin resistance protein/dioxygenase rbh
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABP64275.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Displaying items 1-30 of 785 in total

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