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SCNpilot_cont_500_bf_scaffold_898

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_898_1
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..226)
DNA (225bp) protein (75aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
DNA helicase n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI000313835D
DNA helicase {ECO:0000313|EMBL:KKC27099.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
SCNpilot_cont_500_bf_scaffold_898_2
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219..584)
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EB91_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEZ12872.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_500_bf_scaffold_898_3
unknown

Not on your lists

comp(763..972)
DNA (210bp) protein (70aa)
Uncharacterized protein {ECO:0000313|EMBL:CPR22105.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_cont_500_bf_scaffold_898_4
unknown

Not on your lists

comp(1059..1658)
DNA (600bp) protein (200aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_898_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1713..2189)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C349
Uncharacterized protein {ECO:0000313|EMBL:EZP70746.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCNpilot_cont_500_bf_scaffold_898_6
unknown

Not on your lists

comp(2285..2722)
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_898_7
unknown

Not on your lists

comp(2722..3150)
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_898_8
unknown

Not on your lists

comp(3143..3406)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_898_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3490..3882)
DNA (393bp) protein (131aa)
Uncharacterized protein family UPF0150 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2U5_SPHCR
CopG family transcriptional regulator {ECO:0000313|EMBL:AJP72942.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_898_10
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4143..5519)
DNA (1377bp) protein (459aa)
integrase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BCE4 rbh
integrase family protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_500_bf_scaffold_898_11
unknown

Not on your lists

comp(6181..6468)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_898_12
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6829..7659)
DNA (831bp) protein (277aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
protein involved in catabolism of external DNA n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036E6301 rbh
hypothetical protein; K07115 rbh
SCNpilot_cont_500_bf_scaffold_898_13
unknown

Not on your lists

comp(7917..9104)
DNA (1188bp) protein (396aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_898_14
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9387..10397
DNA (1011bp) protein (337aa)
CysB family transcriptional regulator n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A58CA9 rbh
transcriptional regulator CysB-like protein; K13635 LysR family transcriptional regulator, cys regulon transcriptional activator
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:AIP24768.1}; Cys regulon transcriptional activator {ECO:0000313|EMBL:ABC39046.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
SCNpilot_cont_500_bf_scaffold_898_15
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10394..11365)
DNA (972bp) protein (324aa)
cysE; serine O-acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine O-acetyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDI4_9SPHN rbh
Serine O-acetyltransferase {ECO:0000313|EMBL:EGD57275.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_500_bf_scaffold_898_16
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11757..13838)
DNA (2082bp) protein (694aa)
glycoside hydrolase; K05349 beta-glucosidase [EC:3.2.1.21] rbh
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HXN1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB16833.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_cont_500_bf_scaffold_898_17
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14214..16604
DNA (2391bp) protein (797aa)
TonB-dependent receptor n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM77_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:CCW18300.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
outer membrane receptor (OMR) family protein
SCNpilot_cont_500_bf_scaffold_898_18
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16604..18097
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GWS0_9SPHN rbh
Scaffold8, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31732.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_898_19
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18126..19445
DNA (1320bp) protein (440aa)
MFS transporter n=1 Tax=Sphingobium ummariense RL-3 RepID=T0ILM7_9SPHN rbh
MFS transporter {ECO:0000313|EMBL:EQB29720.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
major facilitator superfamily protein rbh
SCNpilot_cont_500_bf_scaffold_898_20
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19446..20489)
DNA (1044bp) protein (348aa)
Sal operon transcriptional repressor n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MNK0_9SPHN rbh
Sal operon transcriptional repressor {ECO:0000313|EMBL:CCW18299.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
LacI-family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_898_21
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20694..21740
DNA (1047bp) protein (349aa)
gentisate 1,2-dioxygenase (EC:1.13.11.4); K00450 gentisate 1,2-dioxygenase [EC:1.13.11.4] rbh
UPI0003D618F8 related cluster n=1 Tax=unknown RepID=UPI0003D618F8 rbh
Gentisate 1,2-dioxygenase {ECO:0000313|EMBL:ETI64245.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
SCNpilot_cont_500_bf_scaffold_898_22
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21742..22437
DNA (696bp) protein (232aa)
UPI0003D6705C related cluster n=1 Tax=unknown RepID=UPI0003D6705C rbh
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:ETI64246.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
fumarylacetoacetate (FAA) hydrolase rbh
SCNpilot_cont_500_bf_scaffold_898_23
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22430..23056
DNA (627bp) protein (209aa)
maleylacetoacetate isomerase; K01800 maleylacetoacetate isomerase [EC:5.2.1.2]
UPI0003D6950D related cluster n=1 Tax=unknown RepID=UPI0003D6950D
Maleylacetoacetate isomerase {ECO:0000313|EMBL:ETI64247.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
SCNpilot_cont_500_bf_scaffold_898_24
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23074..24678
DNA (1605bp) protein (535aa)
Sulfatase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICG5_9SPHN rbh
sulfatase rbh
Sulfatase {ECO:0000313|EMBL:CCA89990.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_500_bf_scaffold_898_25
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24715..26493)
DNA (1779bp) protein (593aa)
Scaffold15, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31002.1}; EC=4.2.1.9 {ECO:0000313|EMBL:KIS31002.1};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
Dihydroxyacid dehydratase/phosphogluconate dehydratase n=1 Tax=Novosphingobium sp. AP12 RepID=J2FXU7_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_898_26
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26759..27889
DNA (1131bp) protein (377aa)
fumarylacetoacetate hydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62DF4 rbh
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:ETI64347.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
fumarylacetoacetate hydrolase family protein rbh
SCNpilot_cont_500_bf_scaffold_898_27
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27886..28662
DNA (777bp) protein (259aa)
3-oxoacyl-ACP reductase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6E147 rbh
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:EQA99232.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
SDR-family protein rbh
SCNpilot_cont_500_bf_scaffold_898_28
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28662..29519
DNA (858bp) protein (286aa)
gluconolaconase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5F125 rbh
Gluconolaconase {ECO:0000313|EMBL:EQB31839.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
putative gluconolactonase rbh
SCNpilot_cont_500_bf_scaffold_898_29
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29540..30952
DNA (1413bp) protein (471aa)
major facilitator transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B44DD0 rbh
D-xylose proton-symporter XylE {ECO:0000313|EMBL:CCW19377.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
sugar transporter
SCNpilot_cont_500_bf_scaffold_898_30
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31011..31088)
DNA (78bp) protein (26aa)
bifunctional D-altronate/D-mannonate dehydratase n=1 Tax=Sphingomonas elodea RepID=UPI0002630AC2
mandelate racemase/muconate lactonizing protein; K08323 starvation sensing protein RspA
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EZP81131.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
Displaying 30 items

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