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SCNpilot_cont_500_bf_scaffold_10

Search features with annotation key words

Displaying items 1-30 of 460 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_10_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80..1219)
DNA (1140bp) protein (380aa)
UPI0003CEAD64 related cluster n=2 Tax=unknown RepID=UPI0003CEAD64
Uncharacterized protein {ECO:0000313|EMBL:EJK87332.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_10_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1551..2924
DNA (1374bp) protein (458aa)
alpha-glucoside ABC transporter substrate-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00036D5B96
Alpha-glucoside ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL27718.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
aglE; Alpha-glucosides-binding periplasmic protein AglE
SCNpilot_cont_500_bf_scaffold_10_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3034..4047
DNA (1014bp) protein (338aa)
ABC alpha-glucoside transporter, inner membrane subunit AglF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAB9_PELHB rbh
Alpha-glucoside ABC transporter permease {ECO:0000313|EMBL:KFL27717.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
alpha-glucoside ABC transporter inner membrane protein AglF; K10233 alpha-glucoside transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_10_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4047..5255
DNA (1209bp) protein (403aa)
Alpha-glucoside transport system permease protein AglG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAC0_PELHB
Alpha-glucoside transport system permease protein AglG {ECO:0000313|EMBL:CDP52766.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
alpha-glucoside transport system permease protein AglG; K10234 alpha-glucoside transport system permease protein
SCNpilot_cont_500_bf_scaffold_10_5
unknown

Not on your lists

comp(5216..5458)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_10_6
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5460..6149)
DNA (690bp) protein (230aa)
UPI0003D03F51 related cluster n=1 Tax=unknown RepID=UPI0003D03F51
Uncharacterized protein {ECO:0000313|EMBL:KEO88703.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
SCNpilot_cont_500_bf_scaffold_10_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6372..7478)
DNA (1107bp) protein (369aa)
Transcriptional regulator RafR, putative n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAC1_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL27715.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
transcriptional regulator RafR rbh
SCNpilot_cont_500_bf_scaffold_10_8
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7613..9304
DNA (1692bp) protein (564aa)
alpha-glucosidase; K01187 alpha-glucosidase [EC:3.2.1.20] rbh
Alpha-glucosidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAC2_PELHB rbh
Alpha-glucosidase {ECO:0000313|EMBL:KFL27714.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_cont_500_bf_scaffold_10_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9335..10342
DNA (1008bp) protein (336aa)
Maltose/maltodextrin transport ATP-binding protein MalK {ECO:0000313|EMBL:CDP52769.1}; EC=3.6.3.19 {ECO:0000313|EMBL:CDP52769.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Alpha-glucoside transport ATP-binding protein AglK n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAC3_PELHB rbh
alpha-glucoside transport ATP-binding protein AglK; K10239 trehalose/maltose transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_10_10
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10444..12018)
DNA (1575bp) protein (525aa)
Glutathione import ATP-binding protein GsiA n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CTF1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKC33214.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
peptide/opine/nickel uptake family ABC transporter, ATP-binding protein
SCNpilot_cont_500_bf_scaffold_10_11
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12005..12841)
DNA (837bp) protein (279aa)
peptide ABC transporter permease n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B74953
Peptide/opine/nickel uptake family ABC transporter, permease protein {ECO:0000313|EMBL:KFC68393.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
binding-protein-dependent transport systems inner membrane component
SCNpilot_cont_500_bf_scaffold_10_12
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12838..13710)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00035D3F11
Peptide ABC transporter {ECO:0000313|EMBL:KFL30735.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein
SCNpilot_cont_500_bf_scaffold_10_13
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13842..16625)
DNA (2784bp) protein (928aa)
Two-component hybrid sensor and regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAC7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL27707.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
two-component hybrid sensor and regulator
SCNpilot_cont_500_bf_scaffold_10_trna_1
unknown

Not on your lists

16865..16938
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_10_14
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17012..17497)
DNA (486bp) protein (162aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Bacterioferritin n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A2D7_RHIFH
bfr; Bacterioferritin; K03594 bacterioferritin
SCNpilot_cont_500_bf_scaffold_10_15
unknown

Not on your lists

comp(17878..18150)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_10_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18220..20163)
DNA (1944bp) protein (648aa)
Uncharacterized protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GY69_CAUCN rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB13800.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_10_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20215..20826)
DNA (612bp) protein (204aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAD0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP52777.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ErfK/YbiS/YcfS/YnhG protein
SCNpilot_cont_500_bf_scaffold_10_18
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20946..21533
DNA (588bp) protein (196aa)
guaA1; GMP synthase (EC:6.3.5.2)
3-methyladenine-DNA glycosylase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NV02_9RHOB
3-methyladenine DNA glycosylase {ECO:0000313|EMBL:KKB86022.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_cont_500_bf_scaffold_10_19
unknown

Not on your lists

comp(21604..21810)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_10_20
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22420..23859
DNA (1440bp) protein (480aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hisS; histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Histidine--tRNA ligase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQZ1_9RHIZ
SCNpilot_cont_500_bf_scaffold_10_21
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23859..24959
DNA (1101bp) protein (367aa)
Putative ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAD6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB11448.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative ATP phosphoribosyltransferase regulatory subunit; K02502 ATP phosphoribosyltransferase regulatory subunit
SCNpilot_cont_500_bf_scaffold_10_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24952..25680
DNA (729bp) protein (243aa)
ATP phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00046302}; EC=2.4.2.17 {ECO:0000256|SAAS:SAAS00046302};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ATP phosphoribosyltransferase; K00765 ATP phosphoribosyltransferase [EC:2.4.2.17]
ATP phosphoribosyltransferase catalytic subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAD7_PELHB
SCNpilot_cont_500_bf_scaffold_10_23
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25817..26251)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037FCBA5
GtrA family protein
GtrA family protein {ECO:0000313|EMBL:AFK61429.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_cont_500_bf_scaffold_10_24
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26419..27168
DNA (750bp) protein (250aa)
Putative membrane protein YfcA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAD9_PELHB
Membrane protein {ECO:0000313|EMBL:KKC35351.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
putative membrane protein YfcA; K07090
SCNpilot_cont_500_bf_scaffold_10_25
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27403..27879)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003788F28
Uncharacterized protein {ECO:0000313|EMBL:CDP52787.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_10_26
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27945..28241)
DNA (297bp) protein (99aa)
UPI0003CEAD9B related cluster n=1 Tax=unknown RepID=UPI0003CEAD9B
Helix-turn-helix domain protein {ECO:0000313|EMBL:CDH45408.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
helix-turn-helix domain-containing protein
SCNpilot_cont_500_bf_scaffold_10_27
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(28238..28558)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B763DD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
SCNpilot_cont_500_bf_scaffold_10_28
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28657..30297)
DNA (1641bp) protein (547aa)
60 kDa chaperonin n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAE1_PELHB rbh
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
heat shock protein 60 family chaperone GroEL; K04077 chaperonin GroEL rbh
SCNpilot_cont_500_bf_scaffold_10_29
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30345..30632)
DNA (288bp) protein (96aa)
10 kDa chaperonin n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11LG3_MESSB
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
chaperonin Cpn10; K04078 chaperonin GroES
Displaying items 1-30 of 460 in total

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