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SCNpilot_cont_500_bf_scaffold_114

Search features with annotation key words

Displaying items 1-30 of 135 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_114_1
Psychrobacter aquaticus, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(245..2434)
DNA (2190bp) protein (730aa)
Type I restriction-modification system, specificity subunit S {ECO:0000313|EMBL:ERL55888.1}; EC=3.1.21.3 {ECO:0000313|EMBL:ERL55888.1};; TaxID=1354303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter aquaticus CMS 56.;"
restriction modification system DNA specificity domain-containing protein; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Type I restriction-modification system, specificity subunit S n=1 Tax=Psychrobacter aquaticus CMS 56 RepID=U4TBM5_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_114_2
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2434..3909)
DNA (1476bp) protein (492aa)
adenine-specific DNA methyltransferase (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72] rbh
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A1R6_METMM rbh
DNA methyltransferase {ECO:0000313|EMBL:AJF06671.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
SCNpilot_cont_500_bf_scaffold_114_3
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3911..6049)
DNA (2139bp) protein (713aa)
type I restriction-modification system, R subunit (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type I restriction-modification system, R subunit n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PJN2_CELJU
Restriction endonuclease {ECO:0000313|EMBL:AJF06669.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
SCNpilot_cont_500_bf_scaffold_114_4
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6283..6966)
DNA (684bp) protein (228aa)
Site-specific recombinase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD5A4
Recombinase {ECO:0000313|EMBL:KKC24517.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
pin; DNA-invertase from lambdoid prophage e14. Pin
SCNpilot_cont_500_bf_scaffold_114_5
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6999..7868)
DNA (870bp) protein (290aa)
UPI0003D61C14 related cluster n=1 Tax=unknown RepID=UPI0003D61C14 rbh
Uncharacterized protein {ECO:0000313|EMBL:EXL04017.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_cont_500_bf_scaffold_114_6
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7865..8713)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QT61_METSZ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCJ07280.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_500_bf_scaffold_114_7
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8752..9831)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A9C03 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIX16360.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_114_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9824..10417)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1L5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48653.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_114_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10531..11892)
DNA (1362bp) protein (454aa)
Integrase family protein n=2 Tax=Afipia RepID=D6V120_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS30402.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
integrase family protein
SCNpilot_cont_500_bf_scaffold_114_10
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12245..12688)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VB40_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ69506.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_500_bf_scaffold_114_11
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12796..14226)
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AB75_9SPHN rbh
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32410.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
peptidoglycan binding domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_114_12
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14271..15389)
DNA (1119bp) protein (373aa)
Rieske (2Fe-2S) protein; K03862 vanillate monooxygenase [EC:1.14.13.82]
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0IPU4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB13810.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_cont_500_bf_scaffold_114_13
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15439..17706)
DNA (2268bp) protein (756aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y462_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KGB55567.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TonB-dependent receptor
SCNpilot_cont_500_bf_scaffold_114_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17874..19280
DNA (1407bp) protein (469aa)
amidase; K01426 amidase [EC:3.5.1.4]
PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C13685
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_500_bf_scaffold_114_15
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19343..21949
DNA (2607bp) protein (869aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXL1_9SPHN rbh
Sensor/response regulator hybrid {ECO:0000313|EMBL:AJA09194.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
PAS domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_114_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21946..22506
DNA (561bp) protein (187aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO38858.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein id=12554741 bin=CNBR_ACIDO species=Mycobacterium sp. 155 genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
SCNpilot_cont_500_bf_scaffold_114_17
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22513..23139
DNA (627bp) protein (209aa)
uracil-DNA glycosylase id=12554740 bin=CNBR_ACIDO species=Sphingobium japonicum genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:CCW17057.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_114_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23232..25295
DNA (2064bp) protein (688aa)
acyl-peptide hydrolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B756C1 rbh
Acyl-peptide hydrolase {ECO:0000313|EMBL:AHE52774.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
peptidase S9 prolyl oligopeptidase
SCNpilot_cont_500_bf_scaffold_114_19
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25371..26507)
DNA (1137bp) protein (379aa)
Carbohydrate-selective porin OprB n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EA57_9SPHN
carbohydrate-selective porin OprB; K07267 porin
Carbohydrate-selective porin OprB {ECO:0000313|EMBL:EHJ61914.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_cont_500_bf_scaffold_114_trna_1
unknown

Not on your lists

25397..25468
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_114_20
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26666..27916
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G5Q3_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA99030.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
manganese transport protein
SCNpilot_cont_500_bf_scaffold_114_21
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28036..28329
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002892473
Uncharacterized protein {ECO:0000313|EMBL:KHA62798.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_114_22
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28357..28971
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030F593A
Uncharacterized protein {ECO:0000313|EMBL:EZP57398.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_114_23
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29112..31211
DNA (2100bp) protein (700aa)
PAS domain S-box n=1 Tax=Novosphingobium sp. AP12 RepID=J2GX82_9SPHN rbh
PAS domain S-box {ECO:0000313|EMBL:EJL35075.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
ATP-binding region ATPase-like rbh
SCNpilot_cont_500_bf_scaffold_114_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31404..31964)
DNA (561bp) protein (187aa)
Putative lipoprotein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWT3_9SPHN
Membrane protein {ECO:0000313|EMBL:AIT06620.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein; K08995 putative membrane protein
SCNpilot_cont_500_bf_scaffold_114_25
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32091..32501
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWT2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM01246.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_114_26
unknown

Not on your lists

comp(32757..32945)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_114_27
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33115..33831)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631030
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_500_bf_scaffold_114_28
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34445..36523)
DNA (2079bp) protein (693aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I8G9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB07975.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_500_bf_scaffold_114_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36617..37165
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000377293C
Uncharacterized protein {ECO:0000313|EMBL:GAO53731.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying items 1-30 of 135 in total

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