ggKbase home page

SCNpilot_cont_500_bf_scaffold_114_85

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

near complete RP 42 / 55 BSCG 41 / 51 ASCG 12 / 38
Location: comp(101753..102307)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma24 factor n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B40DC5 similarity UNIREF
DB: UNIREF100
  • Identity: 72.3
  • Coverage: 184.0
  • Bit_score: 266
  • Evalue 1.80e-68
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.7
  • Coverage: 184.0
  • Bit_score: 237
  • Evalue 2.10e-59
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 64.2
  • Coverage: 173.0
  • Bit_score: 214
  • Evalue 3.30e-53

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Acidomonas methanolica → Acidomonas → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 555
TTGGGCGAGACGGATCCCGATGCAGAGCTGGTGCAGCGTGTCGGCCGTGGCGACGAGGCGGCGGCGCGCCTGCTCGTCTCGGCCAAGCTGCCGCGCGTGCTGGCGCTGGCCCGGCGCATGACCGGCGAGCGCGGAGAGGCCGAGGATATCGCGCAGGAGGTGTTCCTGCGGGTGTGGCGCAATGCGCGGCGCTGGCGGCCGGGCGCGGCGCGCTTCGATACGTGGCTGCATGTCGTGACGCTCAACCTGTGCCGGGACCGGCTGCGCCGTCGCCGCGAGACCACCATGCCGACGCTGCCGGATATAGTGGATCCCGCGCCGGACGCCGCGCGTGTGCTGGAGGAGACGGCGCGCGGCCGCGCGGTCGCCGACGCGATCGCGGCCTTGCCGGAACGCCAGCGCGAAGCGATCCTGCTCGTCCACTATCAGGACATGACCAACATCGCCGCCGCCGAGGCGCTGTCGGTGAGCGTGGAGGCGCTCGAAAGCCTGCTCGCGCGCGGGCGGCGGGCGTTGCGGGAGCATTTCAGGAAGCAGGACGCGCGTGATGACTGA
PROTEIN sequence
Length: 185
LGETDPDAELVQRVGRGDEAAARLLVSAKLPRVLALARRMTGERGEAEDIAQEVFLRVWRNARRWRPGAARFDTWLHVVTLNLCRDRLRRRRETTMPTLPDIVDPAPDAARVLEETARGRAVADAIAALPERQREAILLVHYQDMTNIAAAEALSVSVEALESLLARGRRALREHFRKQDARDD*