ggKbase home page

SCNpilot_cont_500_bf_scaffold_2256

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2256_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..363)
DNA (363bp) protein (121aa)
Glycerone kinase (EC:2.7.1.29); K00863 dihydroxyacetone kinase [EC:2.7.1.29]
dihydroxyacetone kinase n=1 Tax=Ruegeria conchae RepID=UPI0002378E26
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48976.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_500_bf_scaffold_2256_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(515..1669)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K4I3_9RHOB rbh
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48977.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2256_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1743..2558)
DNA (816bp) protein (272aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sagittula stellata E-37 RepID=A3K4I2_9RHOB rbh
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48978.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_500_bf_scaffold_2256_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2555..3361)
DNA (807bp) protein (269aa)
ABC transporter ATP-binding protein n=1 Tax=Sagittula stellata E-37 RepID=A3K4I1_9RHOB rbh
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49010.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_2256_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3454..3879)
DNA (426bp) protein (142aa)
Homoserine O-acetyltransferase {ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.- {ECO:0000256|SAAS:SAAS00276255};; EC=2.3.1.31 {ECO:0000256|SAAS:SAAS00070942};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
Homoserine O-acetyltransferase n=1 Tax=Sagittula stellata E-37 RepID=A3K4I0_9RHOB
SCNpilot_cont_500_bf_scaffold_2256_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4757..5521)
DNA (765bp) protein (255aa)
DNA-binding response regulator n=1 Tax=Sagittula stellata E-37 RepID=A3K4H9_9RHOB rbh
Bradyrhizobium elkanii strain UASWS1015 Contig175, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48980.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
LuxR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2256_7
Microbacterium sp. MA1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5971..6978
DNA (1008bp) protein (336aa)
dapB-1; DapB (EC:1.3.1.26)
Dihydrodipicolinate reductase n=2 Tax=Actinomycetales RepID=C3UMY1_9MICO
Dihydrodipicolinate reductase {ECO:0000313|EMBL:ACO88872.1}; TaxID=614068 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MA1.;"
SCNpilot_cont_500_bf_scaffold_2256_8
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7031..8212
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Streptomyces purpureus RepID=UPI00037E0674
Acyl-CoA dehydrogenase, C-terminal domain protein {ECO:0000313|EMBL:EKX64367.1}; TaxID=698759 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 91-03.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2256_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8553..9230
DNA (678bp) protein (226aa)
Methyltransferase FkbM family n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07R23_RHOP5
FkbM family methyltransferase
Methyltransferase FkbM family {ECO:0000313|EMBL:ABJ05611.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_500_bf_scaffold_2256_10
unknown

Not on your lists

comp(9347..9631)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2256_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9808..10653)
DNA (846bp) protein (282aa)
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WFP7_RHILT
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:EJC84198.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
oxygenase
SCNpilot_cont_500_bf_scaffold_2256_12
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10716..11939)
DNA (1224bp) protein (408aa)
Acyl-CoA dehydrogenase, type 2, C-terminal domain protein n=1 Tax=Pseudomonas fluorescens F113 RepID=G8Q9S6_PSEFL
acyl-CoA dehydrogenase, type 2, C-terminal domain protein
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETK37173.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
SCNpilot_cont_500_bf_scaffold_2256_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12069..12632)
DNA (564bp) protein (188aa)
Lactoylglutathione lyase-like lyase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CWB7_RHILT
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:EJC84200.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
SCNpilot_cont_500_bf_scaffold_2256_14
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12865..13680)
DNA (816bp) protein (272aa)
DNA-binding protein with HTH domain n=1 Tax=Caulobacter sp. AP07 RepID=J2GBV0_9CAUL
DNA-binding protein with HTH domain {ECO:0000313|EMBL:EJL27320.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
LuxR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2256_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13769..15139)
DNA (1371bp) protein (457aa)
Aminotransferase class-III n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UEZ9_9RHIZ
Aminotransferase class-III {ECO:0000313|EMBL:ENN88753.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
aminotransferase class-III
SCNpilot_cont_500_bf_scaffold_2256_16
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15171..15974)
DNA (804bp) protein (268aa)
UPI0003D6C9BC related cluster n=1 Tax=unknown RepID=UPI0003D6C9BC
IclR family transcriptional regulator
Tax=BJP_IG2158_Rhodobacterales_69_12
SCNpilot_cont_500_bf_scaffold_2256_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16169..17656
DNA (1488bp) protein (496aa)
aldehyde dehydrogenase; K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-]
Aldehyde Dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A2L5_RHILW
Aldehyde dehydrogenase {ECO:0000313|EMBL:KDP76566.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_cont_500_bf_scaffold_2256_18
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17641..18981
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Osedax symbiont Rs2 RepID=S6GEQ5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EPJ45236.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2256_19
Kineosphaera limosa, Kineosphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19084..20919)
DNA (1836bp) protein (612aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Kineosphaera limosa NBRC 100340 RepID=K6WNV5_9MICO rbh
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAB95501.1}; TaxID=1184609 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
oligopeptide/dipeptide ABC transporter ATPase subunit
SCNpilot_cont_500_bf_scaffold_2256_20
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(20916..21791)
DNA (876bp) protein (292aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F8E3_CONWI
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADB49013.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_cont_500_bf_scaffold_2256_21
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21807..22754)
DNA (948bp) protein (316aa)
UPI0003CDE22E related cluster n=1 Tax=unknown RepID=UPI0003CDE22E rbh
Peptide ABC transporter permease {ECO:0000313|EMBL:ESX84366.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
binding-protein-dependent transporters inner membrane component; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_2256_22
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22756..24282)
DNA (1527bp) protein (509aa)
Probable peptide ABC transporter,substrate-binding protein n=2 Tax=Saccharopolyspora erythraea RepID=A4F8F0_SACEN
peptide ABC transporter,substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Probable peptide ABC transporter,substrate-binding protein {ECO:0000313|EMBL:CAM00325.1}; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
SCNpilot_cont_500_bf_scaffold_2256_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24571..25221)
DNA (651bp) protein (217aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV64_RHITR
HAD-superfamily hydrolase, subfamily IA, variant 3
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:AGB74576.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_2256_24
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25571..26620
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003774E5F
Uncharacterized protein {ECO:0000313|EMBL:EPD63133.1}; TaxID=1078086 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
acyl-CoA dehydrogenase, type 2, C-terminal domain protein
SCNpilot_cont_500_bf_scaffold_2256_25
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26732..27271
DNA (540bp) protein (180aa)
Flavin reductase domain protein FMN-binding protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A089_STAND
flavin reductase
Flavin reductase domain protein FMN-binding protein {ECO:0000313|EMBL:ADH89350.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_2256_26
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27398..28309
DNA (912bp) protein (304aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CIS9_9RHIZ
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJN06724.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
family 3 extracellular solute-binding protein
SCNpilot_cont_500_bf_scaffold_2256_27
Galdieria sulphuraria, Galdieria, Cyanidiales, Bangiophyceae, Eukaryota

Not on your lists

comp(28409..29335)
DNA (927bp) protein (309aa)
Formamidase {ECO:0000313|EMBL:EME29605.1}; EC=3.5.1.49 {ECO:0000313|EMBL:EME29605.1};; TaxID=130081 species="Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Galdieria.;" source="Galdieria sulphuraria (Red alga).;"
Formamidase n=1 Tax=Galdieria sulphuraria RepID=M2WZU6_GALSU
acetamidase/formamidase
SCNpilot_cont_500_bf_scaffold_2256_28
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30153..30818)
DNA (666bp) protein (222aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Phyllobacterium sp. YR531 RepID=J2W2G2_9RHIZ
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJN06725.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
amino acid ABC transporter; K02029 polar amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_2256_29
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30928..31302)
DNA (375bp) protein (125aa)
endoribonuclease L-PSP n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D99340
Endoribonuclease L-PSP {ECO:0000313|EMBL:KKB79831.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
translation initiation inhibitor
SCNpilot_cont_500_bf_scaffold_2256_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31317..32279)
DNA (963bp) protein (321aa)
Ornithine cyclodeaminase/mu-crystallin family protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XEY8_RHIFR
ornithine cyclodeaminase/mu-crystallin family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Displaying items 1-30 of 51 in total

View Taxonomy