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SCNpilot_cont_500_bf_scaffold_1924

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1924_1
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(62..295)
DNA (234bp) protein (78aa)
Oxidoreductase FAD-binding domain protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SB89_GEOOG
Oxidoreductase FAD-binding domain-containing protein; K05784 benzoate/toluate 1,2-dioxygenase electron transfer component
Oxidoreductase FAD-binding domain protein {ECO:0000313|EMBL:ADB74037.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCNpilot_cont_500_bf_scaffold_1924_2
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(306..821)
DNA (516bp) protein (172aa)
toluate 1,2-dioxygenase subunit beta (EC:1.14.12.-); K08686 2-chlorobenzoate 1,2-dioxygenase [EC:1.14.12.13] rbh
2-chlorobenzoate 1%2C2-dioxygenase {ECO:0000313|EMBL:CKH38897.1}; EC=1.14.12.13 {ECO:0000313|EMBL:CKH38897.1};; TaxID=1772 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis.;"
benzoate 1,2-dioxygenase subunit beta n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEA76 rbh
SCNpilot_cont_500_bf_scaffold_1924_3
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(827..2179)
DNA (1353bp) protein (451aa)
benzoate 1,2-dioxygenase large subunit; K05549 benzoate/toluate 1,2-dioxygenase alpha subunit [EC:1.14.12.10 1.14.12.-] rbh
Benzoate 1,2-dioxygenase, large subunit n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SB87_GEOOG rbh
Benzoate 1,2-dioxygenase, large subunit {ECO:0000313|EMBL:ADB74035.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCNpilot_cont_500_bf_scaffold_1924_4
unknown

Not on your lists

comp(2342..3304)
DNA (963bp) protein (321aa)
Ribosomal RNA large subunit methyltransferase N n=1 Tax=Patulibacter medicamentivorans RepID=H0E9G2_9ACTN
SCNpilot_cont_500_bf_scaffold_1924_5
unknown

Not on your lists

comp(3383..3679)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1924_6
unknown

Not on your lists

comp(3785..4201)
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1924_7
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4426..5130
DNA (705bp) protein (235aa)
catechol 1,2-dioxygenase; K03381 catechol 1,2-dioxygenase [EC:1.13.11.1] rbh
catechol 1,2-dioxygenase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE916 rbh
Catechol 1,2-dioxygenase {ECO:0000313|EMBL:ADB74032.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCNpilot_cont_500_bf_scaffold_1924_8
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5127..5459
DNA (333bp) protein (111aa)
muconolactone delta-isomerase (EC:5.3.3.4); K03464 muconolactone D-isomerase [EC:5.3.3.4]
Muconolactone delta-isomerase {ECO:0000313|EMBL:ADB74031.1}; EC=5.3.3.4 {ECO:0000313|EMBL:ADB74031.1};; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
Muconolactone delta-isomerase n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SB83_GEOOG
SCNpilot_cont_500_bf_scaffold_1924_9
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5823..7526
DNA (1704bp) protein (568aa)
thiC; Phosphomethylpyrimidine synthase (EC:4.-.-.-) rbh
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; N
Phosphomethylpyrimidine synthase n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JR72_SACES rbh
SCNpilot_cont_500_bf_scaffold_1924_10
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7462..7851)
DNA (390bp) protein (130aa)
hypothetical protein n=2 Tax=Salinispora pacifica RepID=UPI000376518D
Transposase {ECO:0000313|EMBL:EWM13965.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
IS30 family transposase
SCNpilot_cont_500_bf_scaffold_1924_11
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8250..8462)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI00037F8116
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABD11768.1}; TaxID=106370 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
SCNpilot_cont_500_bf_scaffold_1924_12
unknown

Not on your lists

comp(8764..8991)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1924_13
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9079..11367
DNA (2289bp) protein (763aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI000363D449 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ32227.1}; TaxID=452652 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
SCNpilot_cont_500_bf_scaffold_1924_14
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

11364..13664
DNA (2301bp) protein (767aa)
Membrane protein involved in the export of O-antigen and teichoic acid-like protein n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CSC7_TRURR
O-antigen and teichoic acid export membrane protein
Membrane protein involved in the export of O-antigen and teichoic acid-like protein {ECO:0000313|EMBL:ADI13659.1}; Flags: Precursor;; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
SCNpilot_cont_500_bf_scaffold_1924_15
unknown

Not on your lists

14030..14200
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1924_16
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14358..15380
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00037702EF rbh
Uncharacterized protein {ECO:0000313|EMBL:GAF46038.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
AraC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1924_17
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15423..16679)
DNA (1257bp) protein (419aa)
acyl-CoA dehydrogenase (EC:1.3.99.3); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] rbh
acyl-CoA dehydrogenase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003455286 rbh
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AJW39987.1}; TaxID=1564114 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. B7740.;"
SCNpilot_cont_500_bf_scaffold_1924_18
unknown

Not on your lists

17283..17438
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1924_19
unknown

Not on your lists

comp(17690..17839)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1924_20
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18624..19820)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI00037CD82C rbh
Mucin-2 {ECO:0000313|EMBL:EWM10448.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1924_21
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20562..21080
DNA (519bp) protein (173aa)
teicoplanin resistance protein VanZ n=1 Tax=Clostridium sp. JC122 RepID=UPI0002889C4A
Uncharacterized protein {ECO:0000313|EMBL:KHL04808.1}; TaxID=1338436 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
VanZ family protein
SCNpilot_cont_500_bf_scaffold_1924_22
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21163..21639)
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Saccharopolyspora erythraea RepID=A4F9I2_SACEN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EFL31912.1}; TaxID=591159 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes DSM 40736.;"
SCNpilot_cont_500_bf_scaffold_1924_23
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21791..22372
DNA (582bp) protein (194aa)
RNA polymerase n=1 Tax=Streptomyces davawensis JCM 4913 RepID=K4QX96_9ACTO
RNA polymerase
RNA polymerase {ECO:0000313|EMBL:CCK25552.1}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
SCNpilot_cont_500_bf_scaffold_1924_24
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22365..23033
DNA (669bp) protein (223aa)
Predicted protein n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=D9X6M1_STRVR
Uncharacterized protein {ECO:0000313|EMBL:AJF70124.1}; TaxID=362257 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1924_25
unknown

Not on your lists

comp(23356..23820)
DNA (465bp) protein (155aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1924_26
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23932..24267
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Actinoalloteichus spitiensis RepID=UPI00038146F7
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ADB32409.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
SCNpilot_cont_500_bf_scaffold_1924_27
Mycobacterium lentiflavum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24517..24978)
DNA (462bp) protein (154aa)
MaoC family dehydratase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE383
MoaC domain-containing protein {ECO:0000313|EMBL:CQD23972.1}; TaxID=141349 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium lentiflavum.;"
acyl dehydratase MaoC
SCNpilot_cont_500_bf_scaffold_1924_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24998..26218)
DNA (1221bp) protein (407aa)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEA24016.1}; EC=1.3.8.1 {ECO:0000313|EMBL:AEA24016.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Butyryl-CoA dehydrogenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CMN2_PSEUX rbh
butyryl-CoA dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_1924_29
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26268..27806)
DNA (1539bp) protein (513aa)
O-succinylbenzoate--CoA ligase {ECO:0000313|EMBL:AEA24014.1}; EC=6.2.1.26 {ECO:0000313|EMBL:AEA24014.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI00035E47CD rbh
o-succinylbenzoate--CoA ligase rbh
SCNpilot_cont_500_bf_scaffold_1924_30
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27912..28721)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000376ED14
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:CBG75567.1}; TaxID=680198 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabies (strain 87.22) (Streptomyces scabiei).;"
Displaying items 1-30 of 32 in total

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