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SCNpilot_cont_500_bf_scaffold_6152

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_6152_1
unknown

Not on your lists

comp(580..753)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_6152_2
unknown

Not on your lists

comp(704..1270)
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_6152_3
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1708..2010
DNA (303bp) protein (101aa)
Putative RNA-binding protein n=1 Tax=Saccharomonospora marina XMU15 RepID=H5WWC5_9PSEU
Putative RNA-binding protein {ECO:0000313|EMBL:EHR49407.1}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
GAF domain-containing protein
SCNpilot_cont_500_bf_scaffold_6152_4
unknown

Not on your lists

2007..2177
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_6152_5
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2150..2563
DNA (414bp) protein (138aa)
ANTAR domain-containing protein n=1 Tax=Rhodococcus triatomae BKS 15-14 RepID=M2WZS2_9NOCA
Transcriptional regulator {ECO:0000313|EMBL:KIH98738.1}; TaxID=183763 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
two-component system response regulator
SCNpilot_cont_500_bf_scaffold_6152_6
unknown

Not on your lists

comp(2759..3040)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_6152_7
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3172..3492)
DNA (321bp) protein (107aa)
transposase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFF21D
putative transposase for insertion sequence element
Putative transposase for insertion sequence element {ECO:0000313|EMBL:BAH56099.1}; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
SCNpilot_cont_500_bf_scaffold_6152_8
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3489..3791)
DNA (303bp) protein (101aa)
Putative transposase for insertion sequence element n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1BE59_RHOOB
putative transposase for insertion sequence element
Putative transposase for insertion sequence element {ECO:0000313|EMBL:BAH56099.1}; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
SCNpilot_cont_500_bf_scaffold_6152_9
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3890..5785)
DNA (1896bp) protein (632aa)
Integrase domain protein SAM domain protein n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8L5G2_FRASN
integrase domain-containing protein
Integrase domain protein SAM domain protein {ECO:0000313|EMBL:ABW11972.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
SCNpilot_cont_500_bf_scaffold_6152_10
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5782..6102)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI000371FF9D
Putative transcriptional regulator {ECO:0000313|EMBL:CDO20739.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
XRE family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_6152_11
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6142..7197)
DNA (1056bp) protein (352aa)
Integrase family protein n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8KXR3_FRASN
Phage integrase family protein {ECO:0000313|EMBL:CDO20738.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
integrase family protein
SCNpilot_cont_500_bf_scaffold_6152_12
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7304..8746)
DNA (1443bp) protein (481aa)
transposase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFF21D
putative transposase for insertion sequence element
Putative transposase for insertion sequence element {ECO:0000313|EMBL:BAH56099.1}; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
SCNpilot_cont_500_bf_scaffold_6152_13
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9428..9763
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1FMU3_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EOD60838.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
SCNpilot_cont_500_bf_scaffold_6152_14
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9767..10018
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Saccharomonospora marina XMU15 RepID=H5WWY8_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EHR52816.1}; Flags: Precursor;; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_6152_15
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10207..10527
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Actinoalloteichus spitiensis RepID=UPI000372DBC5
Uncharacterized protein {ECO:0000313|EMBL:KEI44445.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_6152_16
unknown

Not on your lists

comp(10488..10772)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_6152_17
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10846..12123)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JY64_SACES rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCH31071.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
SCNpilot_cont_500_bf_scaffold_6152_18
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12430..12585)
DNA (156bp) protein (52aa)
Uncharacterized protein n=2 Tax=Rhodococcus ruber RepID=M2ZPL5_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:EME62294.1}; TaxID=1278076 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber BKS 20-38.;"
hypothetical protein
Displaying 18 items

View Taxonomy