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SCNpilot_cont_500_bf_scaffold_692

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Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_692_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..691)
DNA (690bp) protein (230aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Transcription termination factor Rho n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCP9_9GAMM
transcription termination factor Rho
SCNpilot_cont_500_bf_scaffold_692_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(853..1179)
DNA (327bp) protein (109aa)
thioredoxin n=1 Tax=Dyella japonica RepID=UPI0003117BA4
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
thioredoxin
SCNpilot_cont_500_bf_scaffold_692_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1601..3337
DNA (1737bp) protein (579aa)
ATP-dependent RNA helicase RhlB {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011806}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011808};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATP-dependent RNA helicase RhlB n=2 Tax=Rhodanobacter denitrificans RepID=M4NKJ1_9GAMM rbh
DNA/RNA helicase, superfamily II rbh
SCNpilot_cont_500_bf_scaffold_692_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3454..4131
DNA (678bp) protein (226aa)
Cell division ATP-binding protein FtsE n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ36_9GAMM rbh
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EIL89327.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cell division ATP-binding protein FtsE
SCNpilot_cont_500_bf_scaffold_692_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4128..5108
DNA (981bp) protein (327aa)
Cell division protein FtsX n=1 Tax=Rhodanobacter denitrificans RepID=I4WX89_9GAMM rbh
cell division protein rbh
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_692_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5135..5977
DNA (843bp) protein (281aa)
Two-component system response regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ34_9GAMM rbh
Two-component system response regulator {ECO:0000313|EMBL:EIL89325.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
response regulator containing a CheY-like receiver domain and a GGDEF domain
SCNpilot_cont_500_bf_scaffold_692_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5974..6672
DNA (699bp) protein (233aa)
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Uracil-DNA glycosylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WX87_9GAMM
SCNpilot_cont_500_bf_scaffold_692_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6673..7356)
DNA (684bp) protein (228aa)
PKHD-type hydroxylase UU5_02012 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
PKHD-type hydroxylase UU5_02012 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNJ7_9GAMM rbh
putative iron-regulated protein rbh
SCNpilot_cont_500_bf_scaffold_692_9
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7555..9204
DNA (1650bp) protein (550aa)
ABC transporter ATP-binding protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00036C8241 rbh
ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:CAP63491.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCNpilot_cont_500_bf_scaffold_692_10
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9724..10062
DNA (339bp) protein (113aa)
RNA polymerase sigma factor RpoH n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KZW6_FRAAD
alternative sigma factor RpoH; K03089 RNA polymerase sigma-32 factor
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_cont_500_bf_scaffold_692_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10144..11409)
DNA (1266bp) protein (422aa)
ndh; putative pyridine nucleotide-disulphide oxidoreductase (EC:1.6.99.3); K03885 NADH dehydrogenase [EC:1.6.99.3]
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DD2733 rbh
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AHX14724.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_cont_500_bf_scaffold_692_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11435..13627)
DNA (2193bp) protein (731aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Primosome assembly protein PriA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE31_9GAMM rbh
replication restart DNA helicase PriA rbh
SCNpilot_cont_500_bf_scaffold_692_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14032..15207)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WTU7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM02889.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Protein of unknown function (DUF3667) rbh
SCNpilot_cont_500_bf_scaffold_692_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15303..16715
DNA (1413bp) protein (471aa)
Putative efflux protein, MATE family n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR59_9GAMM rbh
Putative efflux protein, MATE family {ECO:0000313|EMBL:EIL89700.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative efflux protein, MATE family
SCNpilot_cont_500_bf_scaffold_692_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16766..18670
DNA (1905bp) protein (635aa)
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide peptidase {ECO:0000256|PIRNR:PIRNR001217}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Signal peptide peptidase SppA, 67K type n=1 Tax=Rhodanobacter denitrificans RepID=I4WWB5_9GAMM
signal peptide peptidase SppA, 67K type
SCNpilot_cont_500_bf_scaffold_692_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18686..19507)
DNA (822bp) protein (274aa)
ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] rbh
ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUX3_9GAMM rbh
ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA {ECO:0000313|EMBL:EIL91014.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_500_bf_scaffold_692_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19580..19804)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUX4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91015.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_692_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19886..20665
DNA (780bp) protein (260aa)
Tropinone reductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUX5_9GAMM rbh
Tropinone reductase {ECO:0000313|EMBL:EIL91016.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein rbh
SCNpilot_cont_500_bf_scaffold_692_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20673..21311)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D751D9
Uncharacterized protein {ECO:0000313|EMBL:AIF49486.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_cont_500_bf_scaffold_692_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21344..22288)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VTQ3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90594.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
EDD domain protein, DegV family
SCNpilot_cont_500_bf_scaffold_692_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22462..23247
DNA (786bp) protein (262aa)
AMP nucleosidase {ECO:0000313|EMBL:EIL87248.1}; EC=3.2.2.4 {ECO:0000313|EMBL:EIL87248.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
AMP nucleosidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJ57_9GAMM rbh
AMP nucleosidase, putative rbh
SCNpilot_cont_500_bf_scaffold_692_22
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23929..26877
DNA (2949bp) protein (983aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DDD1CA rbh
TonB-dependent receptor {ECO:0000313|EMBL:AIF49482.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
outer membrane cobalamin receptor protein
SCNpilot_cont_500_bf_scaffold_692_23
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26946..28778
DNA (1833bp) protein (611aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F9D6BB rbh
Uncharacterized protein {ECO:0000313|EMBL:AIF49481.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
sulfotransferase family protein
SCNpilot_cont_500_bf_scaffold_692_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28803..30377)
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000360EA2F rbh
Sulfotransferase {ECO:0000313|EMBL:EIL97712.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sulfotransferase family protein
SCNpilot_cont_500_bf_scaffold_692_25
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30374..31951)
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000373DA56 rbh
Sulfotransferase {ECO:0000313|EMBL:AIF49480.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
tetratricopeptide repeat protein,sulfotransferase family protein rbh
SCNpilot_cont_500_bf_scaffold_692_26
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32117..33433
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00037F214E rbh
Aspartyl beta-hydroxylase {ECO:0000313|EMBL:AIF49479.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
aspartyl/asparaginyl beta-hydroxylase-like dioxygenase rbh
SCNpilot_cont_500_bf_scaffold_692_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33607..35211
DNA (1605bp) protein (535aa)
TPR repeat-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VP80_9GAMM rbh
TPR repeat-containing protein {ECO:0000313|EMBL:EIL89021.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
tetratricopeptide repeat protein,sulfotransferase family protein
SCNpilot_cont_500_bf_scaffold_692_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35312..38473)
DNA (3162bp) protein (1054aa)
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Rhodanobacter sp. 115 RepID=I4VP79_9GAMM rbh
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:EIL89020.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
outer membrane receptor protein
SCNpilot_cont_500_bf_scaffold_692_29
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39265..40188)
DNA (924bp) protein (308aa)
Glutaredoxin-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE18_9GAMM rbh
monothiol glutaredoxin, Grx4 family rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_692_30
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40249..40863)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003073669
Lysophospholipase {ECO:0000313|EMBL:AIF46725.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
lysophospholipase L1-like esterase
Displaying items 1-30 of 54 in total

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