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SCNpilot_cont_500_bf_scaffold_723

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_723_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(146..646)
DNA (501bp) protein (167aa)
Acyl-CoA hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2R6_9GAMM
Acyl-CoA hydrolase {ECO:0000313|EMBL:EIL93757.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acyl-CoA hydrolase
SCNpilot_cont_500_bf_scaffold_723_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(681..2684)
DNA (2004bp) protein (668aa)
peptidase t2 asparaginase 2; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5]
Peptidase t2 asparaginase 2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2R9_9GAMM rbh
Peptidase t2 asparaginase 2 {ECO:0000313|EMBL:EIL93760.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_500_bf_scaffold_723_3
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2832..3431
DNA (600bp) protein (200aa)
Two-component system regulatory protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S0_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EYR67012.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
two-component system regulatory protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_723_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3409..4440
DNA (1032bp) protein (344aa)
histidine kinase n=1 Tax=Xanthomonas sacchari RepID=UPI00026300E7 rbh
Two-component system sensor protein {ECO:0000313|EMBL:EIL93762.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Fe2+-dicitrate sensor, membrane component
SCNpilot_cont_500_bf_scaffold_723_5
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4530..7589
DNA (3060bp) protein (1020aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D6735
TonB-dependent receptor
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_cont_500_bf_scaffold_723_6

Not on your lists

7582..9654
DNA (2073bp) protein (691aa)
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=mine drainage metagenome RepID=T1CBY4_9ZZZZ
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:EQD64105.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
peptidase S9 prolyl oligopeptidase
SCNpilot_cont_500_bf_scaffold_723_7
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9750..10841)
DNA (1092bp) protein (364aa)
GTP-binding protein YchF n=1 Tax=Dyella japonica RepID=UPI0002F60E30 rbh
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
GTP-binding protein YchF rbh
SCNpilot_cont_500_bf_scaffold_723_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10925..11509)
DNA (585bp) protein (195aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29) rbh
Peptidyl-tRNA hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S4_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_723_9
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11564..12238)
DNA (675bp) protein (225aa)
50S ribosomal protein L25 n=1 Tax=Dyella ginsengisoli RepID=UPI000345573A rbh
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00147491}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023359}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ribosomal protein L25, Ctc-form
SCNpilot_cont_500_bf_scaffold_723_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12404..13345)
DNA (942bp) protein (314aa)
ribose-phosphate pyrophosphokinase n=1 Tax=Dyella ginsengisoli RepID=UPI00037B470F rbh
ribose-phosphate pyrophosphokinase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_723_trna_1
unknown

Not on your lists

comp(13401..13480)
DNA (80bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_723_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13581..14978)
DNA (1398bp) protein (466aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W539_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_723_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15007..15612)
DNA (606bp) protein (202aa)
Outer membrane lipoprotein LolB n=1 Tax=Rhodanobacter sp. 115 RepID=I4W540_9GAMM rbh
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
outer membrane lipoprotein LolB rbh
SCNpilot_cont_500_bf_scaffold_723_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15609..17408)
DNA (1800bp) protein (600aa)
Flp pilus assembly protein TadD n=1 Tax=Rhodanobacter denitrificans RepID=M4NK11_9GAMM
Flp pilus assembly protein TadD
Flp pilus assembly protein TadD {ECO:0000313|EMBL:AGG88111.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_723_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17476..18753
DNA (1278bp) protein (426aa)
glutamyl-tRNA reductase (EC:1.2.1.70) rbh
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Glutamyl-tRNA reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WG32_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_723_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18835..19914
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T1_9GAMM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
bacterial peptide chain release factor 1 (bRF-1)
SCNpilot_cont_500_bf_scaffold_723_16
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19976..20746
DNA (771bp) protein (257aa)
Polyphosphate kinase 2, PA0141 family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T2_9GAMM rbh
Polyphosphate kinase {ECO:0000313|EMBL:AHX14301.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
polyphosphate kinase 2, PA0141 family rbh
SCNpilot_cont_500_bf_scaffold_723_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20757..21023)
DNA (267bp) protein (89aa)
Acylphosphatase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ21_9GAMM
Acylphosphatase {ECO:0000313|EMBL:EIL87212.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
acylphosphatase
SCNpilot_cont_500_bf_scaffold_723_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21023..21502)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EFC18D
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:EIM02682.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
thiol-disulfide isomerase-like thioredoxin
SCNpilot_cont_500_bf_scaffold_723_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21499..22773)
DNA (1275bp) protein (425aa)
hypothetical protein (EC:3.1.-.-) rbh
UPF0761 membrane protein rbn n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKP0_9GAMM rbh
UPF0761 membrane protein rbn {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_500_bf_scaffold_723_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22956..23555
DNA (600bp) protein (200aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
NAD(P)H dehydrogenase (quinone) n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ18_9GAMM rbh
NAD(P)H:quinone oxidoreductase, type IV
SCNpilot_cont_500_bf_scaffold_723_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23552..23899
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WT93_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02685.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_723_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23931..24398
DNA (468bp) protein (156aa)
cupin n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002E8D9D7
Cupin {ECO:0000313|EMBL:AHX14309.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
cupin
SCNpilot_cont_500_bf_scaffold_723_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24545..26185
DNA (1641bp) protein (547aa)
Acyl-CoA dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WT95_9GAMM rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EIM02687.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acyl-CoA dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_723_24
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

26185..26742
DNA (558bp) protein (186aa)
Adenylate kinase-like kinase n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZKG4_TERRK
adenylate kinase-like kinase
Adenylate kinase-like kinase {ECO:0000313|EMBL:AFL89732.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SCNpilot_cont_500_bf_scaffold_723_25
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26827..27318
DNA (492bp) protein (164aa)
L-asparaginase/GlutRNAGln amidotransferase subunit D (EC:3.5.1.1)
Putative asparaginase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WT97_9GAMM rbh
Putative asparaginase {ECO:0000313|EMBL:EIM02689.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_500_bf_scaffold_723_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27425..28720)
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C8E8F rbh
Transporter {ECO:0000313|EMBL:AHX13567.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
outer membrane efflux protein
SCNpilot_cont_500_bf_scaffold_723_27
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28717..29028)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDCF1
Uncharacterized protein {ECO:0000313|EMBL:AHX13568.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_723_28
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29032..32103)
DNA (3072bp) protein (1024aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000349FF74 rbh
Cytochrome C peroxidase {ECO:0000313|EMBL:KGI76679.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
CzcA family heavy metal efflux protein
SCNpilot_cont_500_bf_scaffold_723_29
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32105..33133)
DNA (1029bp) protein (343aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTT4_DELAS
Uncharacterized protein {ECO:0000313|EMBL:AHX16306.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
RND family efflux transporter MFP subunit
Displaying items 1-30 of 56 in total

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