name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_500_bf_scaffold_1725_1
unknown
|
Not on your lists |
3..83
|
This feature has no annotations |
|
SCNpilot_cont_500_bf_scaffold_1725_trna_1
unknown
|
Not on your lists |
comp(5..77)
|
transferRNA
|
|
SCNpilot_cont_500_bf_scaffold_1725_2
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(197..1096)
|
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCS7_NITMU
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1122..2435)
|
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:KIO49579.1}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:KIO49579.1};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
rbh
Phosphoribosylamine--glycine ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCS8_NITMU
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2625..3587)
|
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Bifunctional purine biosynthesis protein PurH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH23_9PROT
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
|
|
SCNpilot_cont_500_bf_scaffold_1725_5
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4258..4500)
|
DNA-binding protein Fis n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCT0_NITMU
Fis family transcriptional regulator; K03557 Fis family transcriptional regulator, factor for inversion stimulation protein
DNA-binding protein Fis {ECO:0000313|EMBL:ABB73441.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
|
|
SCNpilot_cont_500_bf_scaffold_1725_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4497..5510)
|
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
dihydrouridine synthase TIM-barrel protein nifR3; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-]
rbh
tRNA-dihydrouridine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF86_9PROT
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_7
unknown
|
Not on your lists |
5512..6156
|
This feature has no annotations |
|
SCNpilot_cont_500_bf_scaffold_1725_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6029..7342)
|
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
rbh
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQ69_9PROT
rbh
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:CCU61600.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
|
|
SCNpilot_cont_500_bf_scaffold_1725_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7459..7866)
|
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCT3_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO49574.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
|
|
SCNpilot_cont_500_bf_scaffold_1725_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7871..9190)
|
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:CCU61598.1}; EC=3.4.11.9 {ECO:0000313|EMBL:CCU61598.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Xaa-Pro aminopeptidase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH17_9PROT
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9391..10116)
|
Glucose-1-phosphate thymidylyltransferase {ECO:0000313|EMBL:CCU61597.1}; EC=2.7.7.24 {ECO:0000313|EMBL:CCU61597.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGR2_9PROT
rbh
nucleotidyl transferase
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10136..11137)
|
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF85_9PROT
rbh
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases {ECO:0000313|EMBL:CCU61596.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
aminoglycoside phosphotransferase; K07102
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11265..11621
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQ64_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61595.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K09806 hypothetical protein
|
|
SCNpilot_cont_500_bf_scaffold_1725_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11743..13269
|
MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGI4_9PROT
rbh
MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein {ECO:0000313|EMBL:CCU61594.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13543..17025
|
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
rbh
DNA polymerase III alpha subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHD5_9PROT
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17144..17899
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHP3_9PROT
rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48779.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K06997
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_17
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17936..18187)
|
Ferredoxin n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JRT4_9GAMM
fdx; ferredoxin
Ferredoxin {ECO:0000313|EMBL:ESQ15000.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
|
|
SCNpilot_cont_500_bf_scaffold_1725_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18198..18701)
|
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Phosphopantetheine adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
Phosphopantetheine adenylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR36_9PROT
|
|
SCNpilot_cont_500_bf_scaffold_1725_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18694..19275)
|
16S rRNA (Guanine(966)-N(2))-methyltransferase ## SSU rRNA m(2)G966 {ECO:0000313|EMBL:CCU61896.1}; EC=2.1.1.171 {ECO:0000313|EMBL:CCU61896.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
16S rRNA (Guanine(966)-N(2))-methyltransferase ## SSU rRNA m(2)G966 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG2_9PROT
hypothetical protein
|
|
SCNpilot_cont_500_bf_scaffold_1725_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19321..20679)
|
FIG015287: Zinc protease n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHD8_9PROT
rbh
Zinc protease {ECO:0000313|EMBL:KIO48775.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
|
|
SCNpilot_cont_500_bf_scaffold_1725_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20818..22290)
|
FIG015547: peptidase, M16 family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHP8_9PROT
rbh
Peptidase M16 {ECO:0000313|EMBL:KIO48831.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
|
|
SCNpilot_cont_500_bf_scaffold_1725_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22565..23560
|
Signal recognition particle receptor FtsY n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH87_9PROT
rbh
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23615..24268
|
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR41_9PROT
rbh
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) {ECO:0000313|EMBL:CCU61900.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ABC transporter-like protein; K09812 cell division transport system ATP-binding protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24301..25173
|
Cell division protein FtsX n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG3_9PROT
rbh
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K09811 cell division transport system permease protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25290..26138
|
RNA polymerase sigma factor RpoH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHE0_9PROT
rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26179..26427)
|
YrbA protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH89_9PROT
YrbA protein {ECO:0000313|EMBL:CCU61904.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
BolA-like protein
|
|
SCNpilot_cont_500_bf_scaffold_1725_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26580..26882)
|
STAS domain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHE5_9PROT
Anti-sigma-factor antagonist protein {ECO:0000313|EMBL:KIO48767.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Sulfate transporter/antisigma-factor antagonist STAS; K07122
|
|
SCNpilot_cont_500_bf_scaffold_1725_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26887..27531)
|
Toluene tolerance n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5D8_NITMU
rbh
Signal peptide protein {ECO:0000313|EMBL:KIO48766.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
toluene tolerance; K07323 putative toluene tolerance protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_1725_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27611..28093)
|
Uncharacterized ABC transporter, periplasmic component YrbD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH94_9PROT
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO48765.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K02067 putative ABC transport system substrate-binding protein
|