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SCNpilot_cont_500_bf_scaffold_5440

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5440_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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3..209
DNA (207bp) protein (69aa)
transketolase; K00615 transketolase [EC:2.2.1.1]
transketolase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036D6EC2
Transketolase domain protein {ECO:0000313|EMBL:ACT93349.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_500_bf_scaffold_5440_2
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

301..1740
DNA (1440bp) protein (480aa)
signal peptide protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037E0F2D rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADB42035.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_5440_3
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1765..3177
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037B2997 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACT93348.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_500_bf_scaffold_5440_4
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3857..4204
DNA (348bp) protein (116aa)
periplasmic binding protein/LacI transcriptional regulator (EC:3.6.3.17); K10439 ribose transport system substrate-binding protein
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ACU05000.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ACU05000.1};; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036328AB
SCNpilot_cont_500_bf_scaffold_5440_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4211..4846
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037064D6 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93346.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_500_bf_scaffold_5440_6
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4937..6460
DNA (1524bp) protein (508aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17] rbh
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037D4FB9 rbh
ABC transporter related {ECO:0000313|EMBL:ACU05002.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_cont_500_bf_scaffold_5440_7
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6526..7113
DNA (588bp) protein (196aa)
inner-membrane translocator (EC:3.6.3.17); K10440 ribose transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ACU05003.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ACU05003.1};; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
ribose ABC transporter permease n=1 Tax=Spirosoma panaciterrae RepID=UPI00037E3FAC rbh
SCNpilot_cont_500_bf_scaffold_5440_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7082..7474
DNA (393bp) protein (131aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:ACT93344.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ACT93344.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
ribose ABC transporter permease n=1 Tax=Spirosoma panaciterrae RepID=UPI00037E3FAC
monosaccharide-transporting ATPase; K10440 ribose transport system permease protein
SCNpilot_cont_500_bf_scaffold_5440_9
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7570..8145
DNA (576bp) protein (192aa)
carbohydrate kinase FGGY (EC:2.7.1.30)
Carbohydrate kinase FGGY {ECO:0000313|EMBL:ACU05004.1}; EC=2.7.1.30 {ECO:0000313|EMBL:ACU05004.1};; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036700E5
SCNpilot_cont_500_bf_scaffold_5440_10
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8312..8992
DNA (681bp) protein (227aa)
carbohydrate kinase FGGY (EC:2.7.1.30)
Carbohydrate kinase FGGY {ECO:0000313|EMBL:ACU05004.1}; EC=2.7.1.30 {ECO:0000313|EMBL:ACU05004.1};; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036700E5
SCNpilot_cont_500_bf_scaffold_5440_11
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9060..9413)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000380DF6E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38849.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_5440_12
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9475..9936
DNA (462bp) protein (154aa)
redox protein, regulator of disulfide bond formation n=1 Tax=Spirosoma panaciterrae RepID=UPI000379278B rbh
OsmC family protein; K07397 putative redox protein
OsmC family protein {ECO:0000313|EMBL:ADB38848.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_5440_13
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10019..10186
DNA (168bp) protein (56aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037DF8A7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38847.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_5440_14
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10487..11281
DNA (795bp) protein (265aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45] rbh
thymidylate synthase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036A0AE3 rbh
SCNpilot_cont_500_bf_scaffold_5440_15
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11293..11859
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000378ABF3 rbh
Protein mcbG {ECO:0000313|EMBL:CCH52297.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
pentapeptide repeat-containing protein
SCNpilot_cont_500_bf_scaffold_5440_16
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11970..12278)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003822780
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38845.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_5440_17
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12407..14137
DNA (1731bp) protein (577aa)
DNA polymerase IV n=1 Tax=Spirosoma panaciterrae RepID=UPI000369E043 rbh
PHP domain-containing protein; K02347 DNA polymerase (family X) rbh
PHP domain protein {ECO:0000313|EMBL:ADB38844.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_500_bf_scaffold_5440_18
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14278..15183
DNA (906bp) protein (302aa)
TonB-denpendent receptor n=1 Tax=Spirosoma panaciterrae RepID=UPI000375F975
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADB38843.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
Displaying 18 items

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