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SCNpilot_cont_500_bf_scaffold_4183

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4183_1
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1371)
DNA (1371bp) protein (457aa)
Signal recognition particle protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IZB2_POLGS
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA, ffh family; K03106 signal recognition particle subunit SRP54
SCNpilot_cont_500_bf_scaffold_4183_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1480..2676)
DNA (1197bp) protein (399aa)
Na(+)/H(+) antiporter NhaA n=2 Tax=Rhizobium etli RepID=NHAA_RHIEC
nhaA; Na+/H+ antiporter NhaA
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_500_bf_scaffold_4183_3
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2688..4817)
DNA (2130bp) protein (710aa)
ppcE; prolyl oligopeptidase family protein PpcE (EC:3.4.21.26); K01322 prolyl oligopeptidase [EC:3.4.21.26]
Prolyl oligopeptidase family protein PpcE, putative {ECO:0000313|EMBL:ACJ00851.1}; EC=3.4.21.26 {ECO:0000313|EMBL:ACJ00851.1};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Prolyl oligopeptidase family protein PpcE, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IX27_RHOCS
SCNpilot_cont_500_bf_scaffold_4183_4
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(4814..6835)
DNA (2022bp) protein (674aa)
ppcE; prolyl oligopeptidase family protein PpcE (EC:3.4.21.26); K01322 prolyl oligopeptidase [EC:3.4.21.26]
putative S9A family peptidase id=1697389 bin=GWA2__Bacteriovorax-rel_49_15 species=Janthinobacterium lividum genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
Tax=GWA2_Bdellovibrionales_49_15_curated
SCNpilot_cont_500_bf_scaffold_4183_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6927..7760
DNA (834bp) protein (278aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Diaminopimelate epimerase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AHV6_AZOBR rbh
dapF; diaminopimelate epimerase rbh
SCNpilot_cont_500_bf_scaffold_4183_6
Brucella sp. BO2, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7757..8827
DNA (1071bp) protein (357aa)
MiaB-like tRNA modifying enzyme n=6 Tax=Brucella RepID=N7NS04_9RHIZ
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EFM58461.1}; TaxID=693750 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. BO2.;"
MiaB-like tRNA modifying enzyme
SCNpilot_cont_500_bf_scaffold_4183_7
unknown

Not on your lists

comp(8996..9250)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4183_8
Brucella melitensis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9803..10381
DNA (579bp) protein (193aa)
septation protein A n=1 Tax=Brucella melitensis RepID=UPI0002F34BF7
intracellular septation protein A; K06190 intracellular septation protein
Probable intracellular septation protein A {ECO:0000255|HAMAP-Rule:MF_00189}; TaxID=224914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094).;"
SCNpilot_cont_500_bf_scaffold_4183_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10436..11005)
DNA (570bp) protein (190aa)
NUDIX hydrolase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B44CDF
NUDIX hydrolase {ECO:0000313|EMBL:GAK44257.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NUDIX hydrolase
SCNpilot_cont_500_bf_scaffold_4183_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11269..11784
DNA (516bp) protein (172aa)
Transcriptional regulator, MarR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSZ6_PARL1
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABS63029.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_4183_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12087..12413)
DNA (327bp) protein (109aa)
Thiol-disulfide oxidoreductase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHT3_9RHOB
Thiol-disulfide oxidoreductase {ECO:0000313|EMBL:EJW13591.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
cycY; thiol:disulfide interchange protein; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
SCNpilot_cont_500_bf_scaffold_4183_12
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13493..14158)
DNA (666bp) protein (222aa)
Heme exporter protein B n=1 Tax=Roseobacter sp. CCS2 RepID=A4ELF2_9RHOB
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
ccmB; heme exporter subunit ; membrane component of ABC superfamily; K02194 heme exporter protein B
SCNpilot_cont_500_bf_scaffold_4183_13
bacterium YEK0313, Bacteria

Not on your lists

comp(14155..14778)
DNA (624bp) protein (208aa)
ccmA; cytochrome C biogenesis protein CcmA (EC:3.6.3.41); K02193 heme exporter protein A [EC:3.6.3.41]
ABC transporter n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3AP97_9CAUL
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000313|EMBL:CEJ10870.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_4183_14
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14880..15605)
DNA (726bp) protein (242aa)
acetoacetyl-CoA reductase; K00023 acetoacetyl-CoA reductase [EC:1.1.1.36] rbh
Acetoacetyl-CoA reductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTG0_PARL1 rbh
Acetoacetyl-CoA reductase {ECO:0000313|EMBL:KAI93813.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_cont_500_bf_scaffold_4183_15
bacterium YEK0313, Bacteria

Not on your lists

comp(15725..16888)
DNA (1164bp) protein (388aa)
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
acetyl-CoA acetyltransferase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B59643
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CEJ10885.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_4183_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17124..17738
DNA (615bp) protein (205aa)
Polyhydroxyalkonate synthesis repressor, PhaR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTF8_PARL1
polyhydroxyalkonate synthesis repressor PhaR
Polyhydroxyalkonate synthesis repressor, PhaR {ECO:0000313|EMBL:ABS63191.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_4183_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17870..18583
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMJ1_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62556.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_4183_18
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18591..19331)
DNA (741bp) protein (247aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTF7_PARL1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:CDO59281.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Displaying 18 items

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