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SCNpilot_cont_500_bf_scaffold_4870

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4870_1
unknown

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comp(3..305)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4870_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(324..1238)
DNA (915bp) protein (305aa)
6-phosphogluconate dehydrogenase; K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44] rbh
6-phosphogluconate dehydrogenase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00036F9CDC rbh
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000313|EMBL:ADV28396.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_cont_500_bf_scaffold_4870_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1223..2509)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003653000 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY57682.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_4870_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2506..3051)
DNA (546bp) protein (182aa)
hypothetical protein, partial n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000377D173
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCP18366.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
SCNpilot_cont_500_bf_scaffold_4870_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3147..5321)
DNA (2175bp) protein (725aa)
tail-specific protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] rbh
Tail-specific protease n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KSV4_STEMA rbh
Peptidase S41 {ECO:0000313|EMBL:KDE89468.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
SCNpilot_cont_500_bf_scaffold_4870_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5707..6714)
DNA (1008bp) protein (336aa)
lipA; Lipoate synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] rbh
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia
Lipoyl synthase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KK98_STEMA rbh
SCNpilot_cont_500_bf_scaffold_4870_7
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6730..7440)
DNA (711bp) protein (237aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" so
lipB; Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase (EC:2.3.1.181); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] rbh
lipoate-protein ligase B n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037AEDC9 rbh
SCNpilot_cont_500_bf_scaffold_4870_8
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7428..8774)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas RepID=M5CR14_STEMA rbh
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:EED40216.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_4870_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9055..10113
DNA (1059bp) protein (353aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003794CDB rbh
Membrane protein {ECO:0000313|EMBL:AHY57676.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_4870_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10186..11385)
DNA (1200bp) protein (400aa)
dacC; putative penicillin-binding protein (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] rbh
Putative penicillin-binding protein {ECO:0000313|EMBL:CAQ47442.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CAQ47442.1};; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
Putative penicillin-binding protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FUT2_STRMK rbh
SCNpilot_cont_500_bf_scaffold_4870_11
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11501..12718)
DNA (1218bp) protein (406aa)
Rare lipoprotein A n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7UTB0_STEMA rbh
RlpA protein {ECO:0000313|EMBL:EZP46656.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
rlpA; putative exported rare lipoprotein A; K03642 rare lipoprotein A rbh
SCNpilot_cont_500_bf_scaffold_4870_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12715..13812)
DNA (1098bp) protein (366aa)
mltB; putative murein hydrolase (EC:3.2.1.-); K08305 membrane-bound lytic murein transglycosylase B [EC:3.2.1.-] rbh
murein transglycosylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037AA151 rbh
Stenotrophomonas maltophilia strain ZBG7B contig_124, whole genome shotgun sequence {ECO:0000313|EMBL:KIP79433.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
SCNpilot_cont_500_bf_scaffold_4870_13
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14263..14808)
DNA (546bp) protein (182aa)
rod shape-determining protein RodA n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002D82E36
rod shape-determining protein RodA; K05837 rod shape determining protein RodA
Rod shape-determining protein RodA {ECO:0000313|EMBL:ADV26139.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Displaying 13 items

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